View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19126_high_1 (Length: 430)
Name: NF19126_high_1
Description: NF19126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19126_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 11710903 - 11711301
Alignment:
| Q |
17 |
atgggtaatacac-aatggtaaaacaaaacttggatctaattcttagttagcatgtgttagttaggttatgcagtttatagctttgaaaaacacatcaga |
115 |
Q |
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| T |
11710903 |
atgggtaatacacgaatggtaaaacaaaacttggatctaattcttagttagcatgtgttagttaggttatgcagtttatagctttgaaaaacacatcaga |
11711002 |
T |
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| Q |
116 |
attagaattgggctgtgagattgaggagttaacagcatatccaaacactatattaattcatattttctttcaaatgttagtttgtctaatacaatgttta |
215 |
Q |
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| T |
11711003 |
attagaattgggctgtgagattgaggagttaacagcatatccaaacactatattaattcatattttctttcaaatgttagtttgtctaatacaatgttta |
11711102 |
T |
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| Q |
216 |
cttagtgcctacctgaaagatattttcctttagctttatgagactggccacacacatgcatattcatcatgccagtaagatcttctcatgtcagctgcat |
315 |
Q |
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| T |
11711103 |
cttagtgcctacctgaaagatattttcctttagctttatgagactggccacacacatgcatattcatcatgccagtaagatcttctcatgtcagctgcat |
11711202 |
T |
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| Q |
316 |
ggagctagctacttatattattaatttaagatcatgtgcaagtgcgtnnnnnnnnnnnnnnttacttgtgagtaagtgatagtccttatctcttttcatc |
415 |
Q |
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| T |
11711203 |
ggagctagctacttatattattaatttaagatcatgtgcaagtgcgt--acacacacacacttacttgtgagtaagtgatagtccttatctcttttcatc |
11711300 |
T |
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