View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19126_high_2 (Length: 299)

Name: NF19126_high_2
Description: NF19126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19126_high_2
NF19126_high_2
[»] chr1 (31 HSPs)
chr1 (1-285)||(45682419-45682703)
chr1 (90-164)||(29570682-29570756)
chr1 (10-59)||(45286250-45286299)
chr1 (14-49)||(17191220-17191255)
chr1 (14-59)||(5586734-5586779)
chr1 (14-59)||(9877650-9877695)
chr1 (10-59)||(32694555-32694604)
chr1 (14-59)||(40770387-40770432)
chr1 (14-59)||(40934665-40934710)
chr1 (14-59)||(49021689-49021734)
chr1 (14-59)||(49021913-49021958)
chr1 (14-49)||(6488893-6488928)
chr1 (10-49)||(50312024-50312063)
chr1 (118-208)||(51536578-51536669)
chr1 (14-59)||(731046-731091)
chr1 (1-34)||(4151461-4151494)
chr1 (14-59)||(4695183-4695228)
chr1 (14-59)||(5618093-5618138)
chr1 (14-59)||(5618318-5618363)
chr1 (10-47)||(8828839-8828876)
chr1 (14-59)||(8853342-8853387)
chr1 (14-59)||(10296614-10296659)
chr1 (14-59)||(12649944-12649989)
chr1 (14-59)||(17504290-17504335)
chr1 (14-59)||(28554212-28554257)
chr1 (95-156)||(30027071-30027132)
chr1 (14-59)||(31289276-31289321)
chr1 (14-59)||(34480206-34480251)
chr1 (10-59)||(40770158-40770207)
chr1 (15-59)||(12650169-12650213)
chr1 (14-58)||(26095510-26095554)
[»] chr2 (25 HSPs)
chr2 (95-164)||(474707-474776)
chr2 (90-164)||(9253207-9253281)
chr2 (14-59)||(1479050-1479095)
chr2 (14-59)||(10714255-10714300)
chr2 (10-59)||(28788885-28788934)
chr2 (14-59)||(30488102-30488147)
chr2 (11-59)||(11122663-11122711)
chr2 (61-105)||(29154142-29154186)
chr2 (14-49)||(31557005-31557040)
chr2 (8-43)||(41537496-41537531)
chr2 (112-162)||(24192062-24192112)
chr2 (14-59)||(341334-341379)
chr2 (14-59)||(1650525-1650570)
chr2 (14-43)||(10192106-10192135)
chr2 (14-59)||(15461502-15461547)
chr2 (99-160)||(22399105-22399166)
chr2 (14-59)||(23926413-23926458)
chr2 (14-59)||(23926638-23926683)
chr2 (14-59)||(26499658-26499703)
chr2 (119-164)||(27312572-27312617)
chr2 (14-59)||(28789114-28789159)
chr2 (14-59)||(30488327-30488372)
chr2 (14-59)||(35412124-35412169)
chr2 (14-59)||(42950756-42950801)
chr2 (17-57)||(21251807-21251847)
[»] chr5 (25 HSPs)
chr5 (89-162)||(12875811-12875884)
chr5 (14-59)||(1099139-1099184)
chr5 (1-58)||(7370998-7371055)
chr5 (14-59)||(16737050-16737095)
chr5 (10-59)||(31485975-31486024)
chr5 (15-59)||(33429556-33429600)
chr5 (14-49)||(3168337-3168372)
chr5 (14-49)||(7601850-7601885)
chr5 (10-49)||(7610519-7610558)
chr5 (13-59)||(3974234-3974280)
chr5 (11-49)||(17760018-17760056)
chr5 (15-49)||(30129498-30129532)
chr5 (14-59)||(1643561-1643606)
chr5 (14-59)||(7601615-7601660)
chr5 (14-59)||(14871756-14871801)
chr5 (14-59)||(16736823-16736868)
chr5 (14-59)||(19130892-19130937)
chr5 (14-59)||(19131117-19131162)
chr5 (14-59)||(33381451-33381496)
chr5 (14-59)||(33381675-33381720)
chr5 (14-59)||(33429780-33429825)
chr5 (14-59)||(39589637-39589682)
chr5 (3-39)||(2876405-2876441)
chr5 (15-59)||(32772014-32772058)
chr5 (15-59)||(42611028-42611072)
[»] chr7 (37 HSPs)
chr7 (95-163)||(41317042-41317110)
chr7 (10-59)||(41749827-41749876)
chr7 (10-59)||(2699864-2699913)
chr7 (10-59)||(7149538-7149587)
chr7 (14-59)||(11338139-11338184)
chr7 (10-59)||(21733315-21733364)
chr7 (14-47)||(31115859-31115892)
chr7 (14-59)||(43575084-43575129)
chr7 (14-59)||(45055344-45055389)
chr7 (14-59)||(45867692-45867737)
chr7 (14-59)||(47221729-47221774)
chr7 (4-68)||(7282224-7282288)
chr7 (14-49)||(8522569-8522604)
chr7 (118-181)||(44533669-44533732)
chr7 (14-59)||(7149313-7149358)
chr7 (14-59)||(8805766-8805811)
chr7 (14-59)||(8805991-8806036)
chr7 (14-59)||(8949314-8949359)
chr7 (14-59)||(12423867-12423912)
chr7 (14-59)||(21733090-21733135)
chr7 (14-59)||(24331401-24331446)
chr7 (14-59)||(34287764-34287809)
chr7 (14-59)||(38494936-38494981)
chr7 (14-59)||(38495161-38495206)
chr7 (89-162)||(41054738-41054811)
chr7 (14-59)||(41922304-41922349)
chr7 (14-59)||(42391318-42391363)
chr7 (14-59)||(43575297-43575342)
chr7 (14-59)||(44458031-44458076)
chr7 (14-59)||(45055569-45055614)
chr7 (14-59)||(45062309-45062354)
chr7 (14-59)||(47221942-47221987)
chr7 (15-59)||(11337915-11337959)
chr7 (15-59)||(28588340-28588384)
chr7 (11-59)||(34287535-34287583)
chr7 (15-59)||(45062085-45062129)
chr7 (15-59)||(46426684-46426728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (90-163)||(88532-88605)
[»] chr6 (24 HSPs)
chr6 (95-156)||(1368266-1368327)
chr6 (14-59)||(13853164-13853209)
chr6 (90-164)||(1375861-1375935)
chr6 (90-164)||(1383609-1383683)
chr6 (14-59)||(8129780-8129825)
chr6 (10-59)||(12240728-12240777)
chr6 (14-59)||(21926086-21926131)
chr6 (10-43)||(25121544-25121577)
chr6 (10-58)||(20028021-20028069)
chr6 (10-49)||(24335551-24335590)
chr6 (14-59)||(684975-685020)
chr6 (10-59)||(685200-685249)
chr6 (14-59)||(2316736-2316781)
chr6 (14-59)||(2882905-2882950)
chr6 (10-43)||(3011930-3011963)
chr6 (10-59)||(3105622-3105671)
chr6 (14-59)||(9899217-9899262)
chr6 (14-59)||(9899442-9899487)
chr6 (10-59)||(11361807-11361856)
chr6 (14-59)||(11362027-11362072)
chr6 (14-59)||(22568785-22568830)
chr6 (11-59)||(9220350-9220398)
chr6 (15-59)||(21926311-21926355)
chr6 (15-59)||(24325015-24325059)
[»] chr4 (26 HSPs)
chr4 (14-59)||(16530340-16530385)
chr4 (14-59)||(10993647-10993692)
chr4 (14-59)||(32922089-32922134)
chr4 (14-59)||(46648091-46648136)
chr4 (99-164)||(53145896-53145961)
chr4 (119-163)||(8358546-8358590)
chr4 (15-59)||(39791940-39791984)
chr4 (8-59)||(17040157-17040208)
chr4 (118-169)||(31310739-31310790)
chr4 (14-49)||(39792176-39792211)
chr4 (10-49)||(45655711-45655750)
chr4 (14-59)||(9902675-9902720)
chr4 (14-59)||(9902903-9902948)
chr4 (62-107)||(17040098-17040143)
chr4 (14-59)||(20984161-20984206)
chr4 (96-157)||(24559534-24559595)
chr4 (14-59)||(32922314-32922359)
chr4 (14-59)||(35131043-35131088)
chr4 (90-163)||(41905972-41906045)
chr4 (10-59)||(41935511-41935560)
chr4 (14-59)||(44551162-44551207)
chr4 (14-59)||(52537901-52537946)
chr4 (14-59)||(52538126-52538171)
chr4 (14-59)||(52654179-52654224)
chr4 (15-59)||(26843046-26843090)
chr4 (17-49)||(49498696-49498728)
[»] chr8 (23 HSPs)
chr8 (101-164)||(41139688-41139751)
chr8 (10-48)||(33278953-33278991)
chr8 (14-59)||(17494970-17495015)
chr8 (14-59)||(26938208-26938253)
chr8 (14-59)||(30253648-30253693)
chr8 (8-59)||(148309-148360)
chr8 (95-162)||(1802685-1802752)
chr8 (1-59)||(42685035-42685093)
chr8 (14-59)||(8156955-8157000)
chr8 (14-59)||(18805768-18805813)
chr8 (14-59)||(27713011-27713056)
chr8 (14-59)||(28828238-28828283)
chr8 (14-59)||(29596424-29596469)
chr8 (14-59)||(33279185-33279230)
chr8 (14-59)||(34632472-34632517)
chr8 (14-59)||(36556782-36556827)
chr8 (10-59)||(40277240-40277289)
chr8 (14-59)||(41617287-41617332)
chr8 (14-58)||(21660748-21660792)
chr8 (15-59)||(24419465-24419509)
chr8 (15-59)||(26187375-26187419)
chr8 (15-59)||(34198858-34198902)
chr8 (15-59)||(36556558-36556602)
[»] chr3 (28 HSPs)
chr3 (8-59)||(25061317-25061368)
chr3 (90-164)||(29560432-29560506)
chr3 (14-59)||(11221239-11221284)
chr3 (8-49)||(25061535-25061576)
chr3 (14-59)||(31574500-31574545)
chr3 (14-49)||(21017182-21017217)
chr3 (8-59)||(32809170-32809221)
chr3 (15-49)||(2397809-2397843)
chr3 (14-60)||(35220591-35220637)
chr3 (15-49)||(36546125-36546159)
chr3 (15-49)||(36562155-36562189)
chr3 (14-59)||(6954244-6954289)
chr3 (18-59)||(13997164-13997205)
chr3 (14-59)||(14463370-14463415)
chr3 (14-59)||(18169001-18169046)
chr3 (14-59)||(20209172-20209217)
chr3 (14-59)||(29434323-29434368)
chr3 (14-59)||(35415489-35415534)
chr3 (12-49)||(39778300-39778337)
chr3 (14-59)||(44664643-44664688)
chr3 (14-59)||(44920145-44920190)
chr3 (14-59)||(45171600-45171645)
chr3 (14-59)||(46292604-46292649)
chr3 (14-59)||(50710725-50710770)
chr3 (14-59)||(50711242-50711287)
chr3 (15-59)||(2773392-2773436)
chr3 (119-171)||(29019281-29019333)
chr3 (15-59)||(29434548-29434592)
[»] scaffold0592 (1 HSPs)
scaffold0592 (10-59)||(8635-8684)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 45682703 - 45682419
Alignment:
Q  1 actcttgtggtctcttaacttaatttcaggtaacaatttggtcatttataattttttcacgtccttttggtccatgtgcatatggaacttcaagcttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45682703 actcttgtggtctcttaacttaatttcaggtaacaatttggtcatttataattttttcacgtccttttggtccatgtgcatatggaatttcaagcttcaa 45682604  T
Q  101 atctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgccaacggatcaataggaccaaatgagttgaaaaagga 200  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45682603 atctatggtctttcatccatgtttgcatatgaatcttatatttaaagcttgaaaattcatatgccaacggatcaataggaccaaatgagttgaaaaagga 45682504  T
Q  201 taaaagactaaaccattatctgaaataaagttaaaggtttgcgaaaagcagagtggtagtattacttcattttggtggaaggaag 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45682503 taaaagactaaaccattatctgaaataaagttaaaggtttgcgaaaagcagagtggtagtattacttcattttggtggaaggaag 45682419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 29570682 - 29570756
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||| ||||||||||||||||||| | | |||||| ||||||||||||  |||| |||||||||||| |||||||    
T  29570682 tcaatcttcaaatctatggtctttcacctatgtttgcatatgaatctttgatttgaagcttgaaaatacatatgc 29570756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 45286250 - 45286299
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  45286250 gtctcttaacttaatttcaggtaacaatttggtcctttatctttttttca 45286299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 17191220 - 17191255
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||||||||||||||    
T  17191220 cttaacttaatttcaggtaacaatttggtcatttat 17191255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 5586779 - 5586734
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  5586779 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 5586734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 9877695 - 9877650
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  9877695 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 9877650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 32694604 - 32694555
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||||||| |||||  ||||||||    
T  32694604 gtctcttaacttaatttcaggtaacagtttggtcctttatctttttttca 32694555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 40770432 - 40770387
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  40770432 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 40770387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 40934710 - 40934665
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  40934710 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 40934665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 49021689 - 49021734
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  49021689 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 49021734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 49021958 - 49021913
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  49021958 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 49021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 6488893 - 6488928
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||| |||||||||||||    
T  6488893 cttaacttaatttcaggtaacagtttggtcatttat 6488928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 50312024 - 50312063
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  50312024 gtctcttaatttaatttcaggtaacagtttggtcatttat 50312063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 51536578 - 51536669
Alignment:
Q  118 catgttttcatatgaatcttatatttaaagcttgaaaattcatatgccaacggatcaataggac-caaatgagttgaaaaaggataaaagac 208  Q
    ||||||||||||||||| ||| |||||| | || ||||||||||||| || ||||||| |  ||  ||||||  ||||||||||||||||||    
T  51536578 catgttttcatatgaattttagatttaatgtttcaaaattcatatgcaaaaggatcaaaaacacaaaaatgatgtgaaaaaggataaaagac 51536669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 731091 - 731046
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||| ||||| ||| ||||| |||||||||    
T  731091 cttaacttaatttcaggtaataatttagtcctttatcattttttca 731046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4151494 - 4151461
Alignment:
Q  1 actcttgtggtctcttaacttaatttcaggtaac 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  4151494 actcttgtggtctcttaacataatttcaggtaac 4151461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 4695228 - 4695183
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  4695228 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 4695183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 5618093 - 5618138
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  5618093 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 5618138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 5618363 - 5618318
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  5618363 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 5618318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 8828876 - 8828839
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcattt 47  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  8828876 gtctcttaacttaatttcaggtaacagtttagtcattt 8828839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 8853387 - 8853342
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  8853387 cttaacttaatttcaggtaacagtttggtcctttatttttttttca 8853342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 10296614 - 10296659
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  10296614 cttaacttaatttcaggtaacagtttggtcttttatctttttttca 10296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 12649944 - 12649989
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  12649944 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 12649989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 17504335 - 17504290
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  17504335 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 17504290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 28554212 - 28554257
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  28554212 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 28554257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 30027132 - 30027071
Alignment:
Q  95 cttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaat 156  Q
    |||||||||||||||  || | |||||||| ||||||||| ||| |||| ||||||||||||    
T  30027132 cttcaaatctatggttcttcagccatgtttgcatatgaattttagatttgaagcttgaaaat 30027071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 31289276 - 31289321
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  31289276 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 31289321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 34480206 - 34480251
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  34480206 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 34480251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 40770158 - 40770207
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| || |||| |||||  ||||||||    
T  40770158 gtctcttaacttaatttcaggtaacagttgggtcttttatctttttttca 40770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12650213 - 12650169
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  12650213 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 12650169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 26095510 - 26095554
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttc 58  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||    
T  26095510 cttaacttaatttcaggtaacagtttggtcctttatctttttttc 26095554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 474707 - 474776
Alignment:
Q  95 cttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||||||||||||||| || | |||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  474707 cttcaaatctatggtccttcacccatgtttgcatatgaatcttaaatttgaagcttgaaaattcatatgc 474776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 9253281 - 9253207
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||| |||||||| |||||||||| ||| ||||||| |||| ||||||| |||| | ||||||||||||||||||    
T  9253281 tcaatcttcaaatatatggtctttcatctatgttttgatataaatcttagatttgatgcttgaaaattcatatgc 9253207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1479050 - 1479095
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||    
T  1479050 cttaacttaatttcaggtaataatttggtcatttatctttttttca 1479095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 10714300 - 10714255
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  10714300 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 10714255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 28788885 - 28788934
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||||||| |||||  ||||||||    
T  28788885 gtctcttaacttaatttcaggtaacagtttggtcctttatctttttttca 28788934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 30488102 - 30488147
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||    
T  30488102 cttaacttaatttcaggtaacaatttgatcatttatctttttttca 30488147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 11122663 - 11122711
Alignment:
Q  11 tctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||| ||||||| ||||||  |||||||    
T  11122663 tctcttaacttaatttcaggtaacagtttggtcctttatatatttttca 11122711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 29154142 - 29154186
Alignment:
Q  61 gtccttttggtccatgtgcatatggaacttcaagcttcaaatcta 105  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||    
T  29154142 gtccttttggtccattttcatatggatcttcaagcttcaaatcta 29154186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 31557040 - 31557005
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||| |||||||||||||    
T  31557040 cttaacttaatttcaggtaacagtttggtcatttat 31557005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 41537496 - 41537531
Alignment:
Q  8 tggtctcttaacttaatttcaggtaacaatttggtc 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41537496 tggtcccttaacttaatttcaggtaacaatttggtc 41537531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 24192112 - 24192062
Alignment:
Q  112 tttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatat 162  Q
    |||||| |||||||||||||||| |||||||| || ||| |||||||||||    
T  24192112 tttatctatgttttcatatgaatattatatttgaaacttaaaaattcatat 24192062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 341334 - 341379
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  341334 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 341379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1650525 - 1650570
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  1650525 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 1650570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 10192106 - 10192135
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtc 43  Q
    ||||||||||||||||||||||||||||||    
T  10192106 cttaacttaatttcaggtaacaatttggtc 10192135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 15461547 - 15461502
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||    
T  15461547 cttaacttaatttcaggtaacagtttagtcatttatctttttttca 15461502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 22399166 - 22399105
Alignment:
Q  99 aaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcat 160  Q
    |||| |||||||||| | | |||||| ||| ||||||||| |||| ||||||||||||||||    
T  22399166 aaatttatggtctttcacctatgtttacatttgaatcttagatttgaagcttgaaaattcat 22399105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23926413 - 23926458
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||    
T  23926413 cttaacttaatttcaggtaacagtttcgtcatttatctttttttca 23926458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 23926683 - 23926638
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||| || |||||  ||||||||    
T  23926683 cttaacttaatttcaggtaacaatttgatcttttatctttttttca 23926638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 26499703 - 26499658
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  26499703 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 26499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 27312572 - 27312617
Alignment:
Q  119 atgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||    
T  27312572 atgttttcatatgaatcttatatttgaagtatgaaaatttatatgc 27312617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 28789159 - 28789114
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  28789159 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 28789114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 30488372 - 30488327
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  30488372 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 30488327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 35412169 - 35412124
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  35412169 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 35412124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 42950801 - 42950756
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||| |||||||||||||||| |||||||||||||  ||||||||    
T  42950801 cttaatttaatttcaggtaacagtttggtcatttatctttttttca 42950756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 21251807 - 21251847
Alignment:
Q  17 aacttaatttcaggtaacaatttggtcatttataatttttt 57  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  21251807 aacttaatttcaggtaacactttcgtcatttatattttttt 21251847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 12875811 - 12875884
Alignment:
Q  89 ttcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatat 162  Q
    ||||| ||||||||||||||| ||||||| |||||| |||| |||| ||| ||||||||||||||||| |||||    
T  12875811 ttcaatcttcaaatctatggttttttatctatgtttgcataagaatattagatttaaagcttgaaaatccatat 12875884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 1099184 - 1099139
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  1099184 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 1099139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7370998 - 7371055
Alignment:
Q  1 actcttgtggtctcttaacttaatttcaggtaacaatttggtcatttataattttttc 58  Q
    |||| ||||||| ||||||||||||| |||||||||||| |||||||||  |||||||    
T  7370998 actcctgtggtcccttaacttaattttaggtaacaatttagtcatttatctttttttc 7371055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 16737095 - 16737050
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||    
T  16737095 cttaacttaatttcaggtaataatttggtcatttatctttttttca 16737050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 31485975 - 31486024
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||||||| |||||  ||||||||    
T  31485975 gtctcttaacttaatttcaggtaacagtttggtcctttatctttttttca 31486024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 33429556 - 33429600
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||    
T  33429556 ttaacttaatttcaggtaacaatttggtcctttatctttttttca 33429600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 3168372 - 3168337
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3168372 cttaacttaatttcaggtaacaatttggttatttat 3168337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 7601885 - 7601850
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||| |||||||||||||    
T  7601885 cttaacttaatttcaggtaacagtttggtcatttat 7601850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 7610558 - 7610519
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  7610558 gtctcttaacttaatttcaggtaacagtttggtcctttat 7610519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 3974234 - 3974280
Alignment:
Q  13 tcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||| ||||||||||||| |||||  ||||||||    
T  3974234 tcttaacttaatttcagataacaatttggtcctttatctttttttca 3974280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 17760056 - 17760018
Alignment:
Q  11 tctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  17760056 tctcttaacttaattttaggtaacaatttggttatttat 17760018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 30129498 - 30129532
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||||||| |||||    
T  30129498 ttaacttaatttcaggtaacaatttggtcttttat 30129532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1643561 - 1643606
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  1643561 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 1643606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 7601615 - 7601660
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  7601615 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 7601660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 14871756 - 14871801
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  14871756 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 14871801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 16736823 - 16736868
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  16736823 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 16736868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 19130892 - 19130937
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  19130892 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 19130937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 19131162 - 19131117
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  19131162 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 19131117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 33381451 - 33381496
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  33381451 cttaacttaatttcaggtaacagtttggtcttttatctttttttca 33381496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 33381720 - 33381675
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  33381720 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 33381675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 33429825 - 33429780
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  33429825 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 33429780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 39589637 - 39589682
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  39589637 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 39589682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 2876441 - 2876405
Alignment:
Q  3 tcttgtggtctcttaacttaatttcaggtaacaattt 39  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  2876441 tcttgtggtttcttaacttaatttcagataacaattt 2876405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 32772014 - 32772058
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  32772014 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 32772058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 42611072 - 42611028
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  42611072 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 42611028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 41317042 - 41317110
Alignment:
Q  95 cttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatg 163  Q
    ||||||||||||||||||| || ||||||| | ||||||| ||| ||||||||||||||||| ||||||    
T  41317042 cttcaaatctatggtctttcattcatgtttgcctatgaattttagatttaaagcttgaaaatacatatg 41317110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 41749876 - 41749827
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  41749876 gtctcttagcttaatttcaggtaacaatttggtcatttatctttttttca 41749827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 2699913 - 2699864
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||||||| |||||  ||||||||    
T  2699913 gtctcttaacttaatttcaggtaacagtttggtcctttatctttttttca 2699864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 7149587 - 7149538
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||| ||||| |||||||||||||  ||||||||    
T  7149587 gtctcttaacttaatttcagataacagtttggtcatttatctttttttca 7149538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11338184 - 11338139
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  11338184 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 11338139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 21733364 - 21733315
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| ||| |||||  ||||||||    
T  21733364 gtctcttaacttaatttcaggtaacaatttcgtcctttatctttttttca 21733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 31115859 - 31115892
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcattt 47  Q
    ||||||||||||||||||||||||||||||||||    
T  31115859 cttaacttaatttcaggtaacaatttggtcattt 31115892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 43575084 - 43575129
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  43575084 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 43575129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 45055344 - 45055389
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  45055344 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 45055389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 45867737 - 45867692
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  45867737 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 45867692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 47221729 - 47221774
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  47221729 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 47221774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 7282288 - 7282224
Alignment:
Q  4 cttgtggtctcttaacttaatttcaggtaacaatttggtcatttataattttttcacgtcctttt 68  Q
    ||||| |||||||||||||||||| | ||||||||| |||| ||||  |||||||||||| ||||    
T  7282288 cttgttgtctcttaacttaatttctgataacaattttgtcaattatctttttttcacgtcatttt 7282224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 8522604 - 8522569
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||||||||||| |||||    
T  8522604 cttaacttaatttcaggtaacaatttggtcctttat 8522569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 44533669 - 44533732
Alignment:
Q  118 catgttttcatatgaatcttatatttaaagcttgaaaattcatatgccaacggatcaataggac 181  Q
    ||||||||||||||||| ||| |||| | |||||||||| ||||||| |||||| ||| |||||    
T  44533669 catgttttcatatgaattttaaatttgatgcttgaaaatccatatgcaaacggaccaaaaggac 44533732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 7149313 - 7149358
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  7149313 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 7149358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 8805766 - 8805811
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  8805766 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 8805811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 8806036 - 8805991
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  8806036 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 8805991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 8949314 - 8949359
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  8949314 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 8949359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 12423867 - 12423912
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  12423867 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 12423912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 21733090 - 21733135
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  21733090 cttaacttaatttcaggtaacagtttggtcttttatctttttttca 21733135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 24331401 - 24331446
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  24331401 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 24331446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 34287809 - 34287764
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  34287809 cttaacttaatttcaggtaacactttggtcctttatctttttttca 34287764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 38494936 - 38494981
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  38494936 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 38494981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 38495206 - 38495161
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  38495206 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 38495161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 41054738 - 41054811
Alignment:
Q  89 ttcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatat 162  Q
    ||||| ||| |||| | |||| ||||||| |||||| |||| |||| ||| |||||||||| ||||||||||||    
T  41054738 ttcaatctttaaatttgtggttttttatcaatgtttgcataagaatattagatttaaagctcgaaaattcatat 41054811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 41922304 - 41922349
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  41922304 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 41922349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 42391318 - 42391363
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  42391318 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 42391363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 43575342 - 43575297
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  43575342 cttaacttaatttcaggtaacattttggtcctttatctttttttca 43575297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 44458076 - 44458031
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  44458076 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 44458031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 45055614 - 45055569
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  45055614 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 45055569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 45062354 - 45062309
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  45062354 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 45062309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 47221987 - 47221942
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  47221987 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 47221942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 11337915 - 11337959
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||    
T  11337915 ttaacttaatttcatgtaacaatttggtcctttatctttttttca 11337959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 28588340 - 28588384
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  28588340 ttaacttaatttcaggtaacagtttggtcttttatctttttttca 28588384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 34287535 - 34287583
Alignment:
Q  11 tctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||| |||||||| ||||||| |||||  ||||||||    
T  34287535 tctcttaacttaattttaggtaacagtttggtcctttatctttttttca 34287583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 45062085 - 45062129
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  45062085 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 45062129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 46426684 - 46426728
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||| |||||||||||||||| |||||  ||||||||    
T  46426684 ttaacttaattttaggtaacaatttggtcctttatctttttttca 46426728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 88605 - 88532
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatg 163  Q
    |||| |||||||| ||| | |||| ||| ||||||||||||||||| ||||||| | |||||||||||||||||    
T  88605 tcaatcttcaaatatataggctttcatctatgttttcatatgaatcatatatttgatgcttgaaaattcatatg 88532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 1368327 - 1368266
Alignment:
Q  95 cttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaat 156  Q
    ||||||||||||| ||||| || |||||||| | |||||||||| |||||||||||||||||    
T  1368327 cttcaaatctatgttctttcattcatgttttgacatgaatcttagatttaaagcttgaaaat 1368266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 13853164 - 13853209
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  13853164 cttaacttaatttcaggtaacaatttggtcatttatctttttttca 13853209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 1375935 - 1375861
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||| ||||||||||||| ||||| || ||||||| | |||||| |||| ||||||| ||||||||| |||||||    
T  1375935 tcaatcttcaaatctatgttctttcattcatgtttgcctatgaaccttagatttaaaacttgaaaatacatatgc 1375861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 1383683 - 1383609
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||| ||||||||||||| ||||| || ||||||| | |||||| |||| ||||||| ||||||||| |||||||    
T  1383683 tcaatcttcaaatctatgttctttcattcatgtttgcctatgaaccttagatttaaaacttgaaaatacatatgc 1383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 8129825 - 8129780
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  8129825 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 8129780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 12240777 - 12240728
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||||||| |||||  ||||||||    
T  12240777 gtctcttaacttaatttcaggtaacagtttggtcctttatctttttttca 12240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 21926086 - 21926131
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||    
T  21926086 cttaacttaatttcaggtaacagtttggtcctttatatttttttca 21926131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 25121544 - 25121577
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtc 43  Q
    ||||||||||||||||||||||||||||||||||    
T  25121544 gtctcttaacttaatttcaggtaacaatttggtc 25121577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 20028069 - 20028021
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttc 58  Q
    |||||||||||||||||||||||||| ||||||| |||||  |||||||    
T  20028069 gtctcttaacttaatttcaggtaacagtttggtcttttatctttttttc 20028021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 24335551 - 24335590
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  24335551 gtctcttaatttaatttcaggtaacaatttggtcctttat 24335590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 684975 - 685020
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||    
T  684975 cttaacttaatttcagataacaatttggtcctttatctttttttca 685020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 685249 - 685200
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||| ||| |||||  ||||||||    
T  685249 gtctcttaacttaatttcaggtaacagtttagtcctttatctttttttca 685200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 2316781 - 2316736
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  2316781 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 2316736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 2882905 - 2882950
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  2882905 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 2882950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 3011930 - 3011963
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtc 43  Q
    |||||||||||||||||||||||||| |||||||    
T  3011930 gtctcttaacttaatttcaggtaacagtttggtc 3011963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3105622 - 3105671
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||  ||||||| |||||  ||||||||    
T  3105622 gtctcttaacttaatttcaggtaactgtttggtcctttatctttttttca 3105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 9899217 - 9899262
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  9899217 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 9899262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 9899487 - 9899442
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  9899487 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 9899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11361807 - 11361856
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||| |||||||||||||||| ||| |||||||||  ||||||||    
T  11361807 gtctcttaatttaatttcaggtaacagtttagtcatttatctttttttca 11361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11362072 - 11362027
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||    
T  11362072 cttaacttaatttcagataacaatttggtcctttatctttttttca 11362027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22568785 - 22568830
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  22568785 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 22568830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 9220398 - 9220350
Alignment:
Q  11 tctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||| | ||||||| |||||  ||||||||    
T  9220398 tctcttaacttaatttcaggtaagagtttggtcttttatctttttttca 9220350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 21926355 - 21926311
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  21926355 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 21926311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 24325015 - 24325059
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||| | |||||  ||||||||    
T  24325015 ttaacttaatttcaggtaacaatttggccctttatctttttttca 24325059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 16530340 - 16530385
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  16530340 cttaacttaatttcaggtaacaatttggtcatttatctttttttca 16530385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 10993647 - 10993692
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  10993647 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 10993692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32922089 - 32922134
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  32922089 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 32922134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 46648091 - 46648136
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  46648091 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 46648136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 53145961 - 53145896
Alignment:
Q  99 aaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||| ||||||||||  || ||| ||||||| ||||||||||||||||  ||||||||||||||||    
T  53145961 aaatatatggtctttcctctatgctttcatacgaatcttatatttaaattttgaaaattcatatgc 53145896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 8358546 - 8358590
Alignment:
Q  119 atgttttcatatgaatcttatatttaaagcttgaaaattcatatg 163  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||    
T  8358546 atgtttgcatatgaatcttagatttgaagcttgaaaattcatatg 8358590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 39791940 - 39791984
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||    
T  39791940 ttaacttaatttcaggtaacaatttggtcctttatctttttttca 39791984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17040208 - 17040157
Alignment:
Q  8 tggtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||| |||||||||||||||| ||||||||||||| |||||  ||||||||    
T  17040208 tggtcccttaacttaatttcagttaacaatttggtcctttatctttttttca 17040157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 31310739 - 31310790
Alignment:
Q  118 catgttttcatatgaatcttatatttaaagcttgaaaattcatatgccaacg 169  Q
    ||||||||||||||||| ||| ||||||  ||||||||||||||||| ||||    
T  31310739 catgttttcatatgaattttagatttaatacttgaaaattcatatgctaacg 31310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 39792211 - 39792176
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||||||||||| |||||    
T  39792211 cttaacttaatttcaggtaacaatttggtcctttat 39792176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 45655711 - 45655750
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  45655711 gtctcttaacttaatttcaggtaacaattttgtcttttat 45655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 9902675 - 9902720
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  9902675 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 9902720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 9902948 - 9902903
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  9902948 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 9902903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 17040143 - 17040098
Alignment:
Q  62 tccttttggtccatgtgcatatggaacttcaagcttcaaatctatg 107  Q
    |||||||||| ||| ||||||||||  |||||||||||||||||||    
T  17040143 tccttttggttcatttgcatatggattttcaagcttcaaatctatg 17040098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 20984206 - 20984161
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  20984206 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 20984161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 24559534 - 24559595
Alignment:
Q  96 ttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaatt 157  Q
    ||||||||||||||| || || ||||||||||||||||| ||| |||| | | |||||||||    
T  24559534 ttcaaatctatggtcattcattcatgttttcatatgaattttagattttatgtttgaaaatt 24559595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 32922359 - 32922314
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  32922359 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 32922314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 35131088 - 35131043
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  35131088 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 35131043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 41906045 - 41905972
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatg 163  Q
    |||| |||||||||||| |||||||| |||| ||| |||||| || ||| |||| || ||||||||| ||||||    
T  41906045 tcaatcttcaaatctatagtcttttacccatatttgcatatgcatattagattttaaacttgaaaatccatatg 41905972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 41935511 - 41935560
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| || |||| |||||  ||||||||    
T  41935511 gtctcttaacttaatttcaggtaacagttcggtcctttatctttttttca 41935560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 44551207 - 44551162
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  44551207 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 44551162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 52537901 - 52537946
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  52537901 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 52537946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 52538171 - 52538126
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  52538171 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 52538126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 52654224 - 52654179
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  52654224 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 52654179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 26843090 - 26843046
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  26843090 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 26843046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 49498728 - 49498696
Alignment:
Q  17 aacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||||| |||||    
T  49498728 aacttaatttcaggtaacaatttggtcctttat 49498696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 41139751 - 41139688
Alignment:
Q  101 atctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||||||||| |||   ||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  41139751 atctatggtcatttgctcatatttgcatatgaatcttatattgaaagcttgaaaattcatatgc 41139688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 33278953 - 33278991
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcattta 48  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  33278953 gtctcttaacttaatttcaggtaacaatttggtctttta 33278991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 17495015 - 17494970
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  17495015 cttaacttaatttcaggtaacattttggtcatttatctttttttca 17494970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 26938208 - 26938253
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  26938208 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 26938253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 30253648 - 30253693
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||    
T  30253648 cttaacttaatttcaggtaacagtttggtcatttatctttttttca 30253693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 148309 - 148360
Alignment:
Q  8 tggtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||| ||||||||||||| |||||||||||||||| |||||  ||||||||    
T  148309 tggtcccttaacttaattttaggtaacaatttggtcctttatctttttttca 148360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 1802752 - 1802685
Alignment:
Q  95 cttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatat 162  Q
    ||||||||||||||| ||| |   |||||| ||||||||||||| |||| || |||||||||||||||    
T  1802752 cttcaaatctatggtttttcacttatgtttacatatgaatcttaaatttgaaacttgaaaattcatat 1802685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42685093 - 42685035
Alignment:
Q  1 actcttgtggtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||| | ||||||||||||||||| | |||||||||||||| |||||  ||||||||    
T  42685093 actcttttagtctcttaacttaattttaagtaacaatttggtcctttatctttttttca 42685035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 8157000 - 8156955
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  8157000 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 8156955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 18805768 - 18805813
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  18805768 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 18805813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 27713056 - 27713011
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  27713056 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 27713011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 28828238 - 28828283
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||    
T  28828238 cttaacttaatttcaagtaacaatttggtcctttatctttttttca 28828283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 29596424 - 29596469
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  29596424 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 29596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 33279230 - 33279185
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  33279230 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 33279185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 34632517 - 34632472
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  34632517 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 34632472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 36556827 - 36556782
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  36556827 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 36556782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 40277240 - 40277289
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||| | ||||||| |||||  ||||||||    
T  40277240 gtctcttaacttaatttcaggtaatagtttggtcctttatctttttttca 40277289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 41617332 - 41617287
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  41617332 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 41617287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 21660748 - 21660792
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttc 58  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||    
T  21660748 cttaacttaatttcaggtaacagtttggtcctttatctttttttc 21660792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 24419465 - 24419509
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||| |||||| ||||||||| |||||| ||||||||    
T  24419465 ttaacttaattttaggtaataatttggtcctttatatttttttca 24419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 26187419 - 26187375
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  26187419 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 26187375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 34198858 - 34198902
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||    
T  34198858 ttaacttaatttcaggtaacagtttggtcctttatcaatttttca 34198902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36556558 - 36556602
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  36556558 ttaacttaatttcaggtaacagtttggtcctttatttttttttca 36556602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 25061317 - 25061368
Alignment:
Q  8 tggtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||| |||||||||||||||||||||||||||||| |||||  ||||||||    
T  25061317 tggtcccttaacttaatttcaggtaacaatttggtcctttatctttttttca 25061368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 29560506 - 29560432
Alignment:
Q  90 tcaagcttcaaatctatggtcttttatccatgttttcatatgaatcttatatttaaagcttgaaaattcatatgc 164  Q
    |||| |||||||| |||||||||| ||| |||||| |||||||||||||  ||| ||| ||||||||| ||||||    
T  29560506 tcaatcttcaaatatatggtctttcatctatgtttgcatatgaatcttaactttgaagattgaaaatttatatgc 29560432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11221284 - 11221239
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  11221284 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 11221239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 25061576 - 25061535
Alignment:
Q  8 tggtctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  25061576 tggtctcttaacttaatttcaggtaacagtttggtcctttat 25061535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 31574545 - 31574500
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||    
T  31574545 cttaacttaatttcaggtaacaatttggtcctttatctttttttca 31574500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 21017217 - 21017182
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||| |||||||||||||    
T  21017217 cttaacttaatttcaggtaacagtttggtcatttat 21017182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 32809170 - 32809221
Alignment:
Q  8 tggtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||| ||||| |||||||||||||||||||||||| |||||  ||||||||    
T  32809170 tggtcccttaatttaatttcaggtaacaatttggtcctttatctttttttca 32809221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 2397809 - 2397843
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||| |||||||||    
T  2397809 ttaacttaatttcaggtaacaattttgtcatttat 2397843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 35220591 - 35220637
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttcac 60  Q
    |||||||||||||||| ||||||||| |||||||||  |||||||||    
T  35220591 cttaacttaatttcagataacaatttcgtcatttatctttttttcac 35220637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 36546125 - 36546159
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||||||| |||||    
T  36546125 ttaacttaatttcaggtaacaatttggtcctttat 36546159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 36562189 - 36562155
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttat 49  Q
    ||||||||||||||||||||||||||||| |||||    
T  36562189 ttaacttaatttcaggtaacaatttggtcctttat 36562155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 6954289 - 6954244
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||| || |||||||||||||||||||  ||||||||    
T  6954289 cttaacttaattttagataacaatttggtcatttatctttttttca 6954244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13997205 - 13997164
Alignment:
Q  18 acttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| |||||  ||||||||    
T  13997205 acttaatttcaggtaacaatttggtcctttatctttttttca 13997164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 14463415 - 14463370
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  14463415 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 14463370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 18169046 - 18169001
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||| ||||| |||||||||||||  ||||||||    
T  18169046 cttaacttaatttcagataacagtttggtcatttatctttttttca 18169001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 20209172 - 20209217
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  20209172 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 20209217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 29434323 - 29434368
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||||||||| || |||||  ||||||||    
T  29434323 cttaacttaatttcaggtaacaatttgatcctttatctttttttca 29434368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 35415534 - 35415489
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  35415534 cttaacttaatttcaggtaacagtttggtcttttatctttttttca 35415489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 39778300 - 39778337
Alignment:
Q  12 ctcttaacttaatttcaggtaacaatttggtcatttat 49  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  39778300 ctcttaacttaatttcaggtaacagtttagtcatttat 39778337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 44664643 - 44664688
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||||||| ||| |||||  ||||||||    
T  44664643 cttaacttaatttcaggtaacaatttagtcctttatctttttttca 44664688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 44920190 - 44920145
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||| |||||||||||| |||||  ||||||||    
T  44920190 cttaacttaatttcaggcaacaatttggtcctttatctttttttca 44920145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 45171600 - 45171645
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||| ||||||||||||||| |||||  ||||||||    
T  45171600 cttaacttaatttcgggtaacaatttggtcctttatctttttttca 45171645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 46292604 - 46292649
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  46292604 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 46292649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 50710725 - 50710770
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  50710725 cttaacttaatttcaggtaacagtttggtcttttatctttttttca 50710770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 50711287 - 50711242
Alignment:
Q  14 cttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||    
T  50711287 cttaacttaatttcaggtaacagtttggtcctttatctttttttca 50711242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 2773436 - 2773392
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||||||||||||||||||||| |||||| |||||  ||||||||    
T  2773436 ttaacttaatttcaggtaacaacttggtcctttatctttttttca 2773392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 29019281 - 29019333
Alignment:
Q  119 atgttttcatatgaatcttatatttaaagcttgaaaattcatatgccaacgga 171  Q
    |||||||||||| ||| ||| |||| | |||||||||||||||||| ||||||    
T  29019281 atgttttcatattaattttaaatttgatgcttgaaaattcatatgcaaacgga 29019333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 29434592 - 29434548
Alignment:
Q  15 ttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  29434592 ttaacttaatttcaggtaacagtttggtcctttatctttttttca 29434548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 8684 - 8635
Alignment:
Q  10 gtctcttaacttaatttcaggtaacaatttggtcatttataattttttca 59  Q
    |||| ||||||||||||||||||||| ||||||| |||||  ||||||||    
T  8684 gtcttttaacttaatttcaggtaacagtttggtcctttatctttttttca 8635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University