View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19126_low_1 (Length: 839)
Name: NF19126_low_1
Description: NF19126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19126_low_1 |
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| [»] scaffold0219 (4 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 429 - 832
Target Start/End: Complemental strand, 11456 - 11055
Alignment:
| Q |
429 |
agtgcataatagagggtcatgtttcatctattgtgaatgtcccaaggagcaatgtcaagagatttagacgcaagaacacattttaggaattgcgaatcgc |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11456 |
agtgcataatagagggtcatgtttcatctattgtgaatgtcccaaggagcaatgtcaagagatttagacgcaagaacacattttaggaattgcgaatcgc |
11357 |
T |
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| Q |
529 |
ctgaagggatatgacccttttcacgttttgcctcgatctcacaannnnnnnnattgtggcatatgaatatccttagacatctgcttccgaggttgtttat |
628 |
Q |
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| T |
11356 |
ctgaagggatatgacccttttcaccttttgcctcggtctcacaattttttttattgtggcatatgaatatccttagacatctgcttccgaggttgtttat |
11257 |
T |
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| Q |
629 |
ctacgagtgtcctatggtgaaacaattagaacaacaataatacaatctttcgtagacgatatatcaacataaaatgcaaaaccttcgcacatcaccaaca |
728 |
Q |
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| T |
11256 |
ctacgagtgtcctatggtgaaacaattagaccaacaataatacaatctttcgtagacgatat--caacataaaatgcaaaaccttcgcgcatcaccaaca |
11159 |
T |
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| Q |
729 |
cttcatcaaatattctctaggatatgtcaatgtcgacaagaatgccagcgtagtacctaccctgcttgatatttcaaacaatgttcttggcagccaatat |
828 |
Q |
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| T |
11158 |
cttcatcaaatattctctaggataggtcaatgtcgacaagaatgccagcgtagtacctaccccgcttgatatttcaaacaatgttcttggcagccaatat |
11059 |
T |
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| Q |
829 |
tctt |
832 |
Q |
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|||| |
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| T |
11058 |
tctt |
11055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 11867 - 11518
Alignment:
| Q |
18 |
ttatcaatcgatcttgtttataaatatagtatgtataatatatatgccaaccaaccacaatataccttaactttgcaggactatgactataatgcaagac |
117 |
Q |
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| T |
11867 |
ttatcaatcgatcttgtttataaatatagtatgtataatatatatgccaaccaaccacaatataccttaactttgcaggactatgactataatgcaagac |
11768 |
T |
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| Q |
118 |
cattgcagccattaaacaaccgcttagtgcagctgaactgttatgaagctggcccatgagtatgataagaaaacttagtattcatcatagtctatactat |
217 |
Q |
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| T |
11767 |
cattgcagccattaaacaaccgcttagtgcagctgaactgttatggagctggcccatgagtatgataagaaaacttagtattcatcatagtctatactat |
11668 |
T |
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| Q |
218 |
agattcttctatttaggatgagtcgattttaattgtaataagcatgaagtgtcactctagaattcagtagaattctgttatgccatgttctatatgcatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11667 |
agattcttctatttaggatgagtcgattttaattgtaataagcatgaaatgtcactctagaattcaggagaattctgttatgccatgttctatatgcatt |
11568 |
T |
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| Q |
318 |
gtaaaataatctatgatgaaaagtatgaagttaacctagacgaatagcaa |
367 |
Q |
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| T |
11567 |
gtaaaataatctatgatgaaaagtatgaagttaccctagacgaatagcaa |
11518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 23714 - 23652
Alignment:
| Q |
86 |
aactttgcaggactatgactataatgcaagaccattgcagccattaaacaaccgcttagtgca |
148 |
Q |
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| T |
23714 |
aactttgcaggactcagattctaatgcaagaccattgcaaccattaaacaaccgtttagtgca |
23652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 28933 - 28866
Alignment:
| Q |
81 |
accttaactttgcaggactatgactataatgcaagaccattgcagccattaaacaaccgcttagtgca |
148 |
Q |
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| T |
28933 |
acctcaactttgcaggactcagattctaatgcaagatcattgcaaccattaaacaaccgtttagtgca |
28866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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