View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19126_low_3 (Length: 396)
Name: NF19126_low_3
Description: NF19126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19126_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 25540391 - 25540779
Alignment:
| Q |
1 |
tcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatcagctaacgcatcagtaaccaatttcactgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540391 |
tcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatcagctaacgcatcagtaaccaatttcactgagga |
25540490 |
T |
|
| Q |
101 |
acgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagctaaaggactacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540491 |
acgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagctaaaggactacta |
25540590 |
T |
|
| Q |
201 |
acttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540591 |
acttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttaggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaa |
25540690 |
T |
|
| Q |
301 |
ccaagtatgtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540691 |
ccaagtatgtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
25540779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 25517238 - 25517048
Alignment:
| Q |
5 |
aaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgt |
104 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
25517238 |
aaaaaacttaataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaacgtatcagcagccaatttcactgaggaacgt |
25517139 |
T |
|
| Q |
105 |
tacttgttccatctatcaaatttaccattatatagaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagctaaaggact |
196 |
Q |
| |
|
||| | |||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25517138 |
tacctattccatctatcatatttaccatta-aaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaaaggact |
25517048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 25524860 - 25525049
Alignment:
| Q |
5 |
aaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgt |
104 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
25524860 |
aaaaaacttaataaaccataaaatctgaaaattataggagcgaatggtaaattattagtaatcagtcaacgcatcatcaaccaatttcactgaggaatgt |
25524959 |
T |
|
| Q |
105 |
tacttgttccatctatcaaatttaccattatatagaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagctaaaggactacta |
200 |
Q |
| |
|
||| |||||||||||||| || | | | | ||| ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
25524960 |
tacctgttccatctatcatat------taaaaaaaaacggctcctagagttgcatttgttgcgagcactcaaatcgtcaaagccaaaggactacta |
25525049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 215 - 389
Target Start/End: Original strand, 25534070 - 25534248
Alignment:
| Q |
215 |
tgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagt------at |
308 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
25534070 |
tgcttctaacaacatatttgtatat-aaaggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaat |
25534168 |
T |
|
| Q |
309 |
gtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
389 |
Q |
| |
|
|||||| ||| ||||||||| |||| ||| |||||||||||| ||||| |||||||||| ||||| ||||| ||| |||| |
|
|
| T |
25534169 |
gtgtaccttttctatgcaactatgtt-tctctaattgactcttccattcatagtcatgaacattggcaattattgaagatg |
25534248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 389
Target Start/End: Complemental strand, 25516359 - 25516165
Alignment:
| Q |
200 |
aacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaa |
299 |
Q |
| |
|
|||| |||||| ||| | ||||||| |||||||||||| ||| |||| ||||||| ||| || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25516359 |
aactagatacaatgtagattctaactacatagttgtatctgacaggtgcatgttcagtagctggatgtgttcttaggaacctcgatgcatttgaaagtaa |
25516260 |
T |
|
| Q |
300 |
accaagt------atgtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
389 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| | | |||||||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
25516259 |
accaagtaactgaatgtgtacctttcatatgcaaacatgtt-tttctaattgactcttcgattcatagtcatgaagtttggaaattactgatgatg |
25516165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 215 - 389
Target Start/End: Original strand, 25526068 - 25526246
Alignment:
| Q |
215 |
tgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaa------gtat |
308 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||| || | || |
|
|
| T |
25526068 |
tgcttctaacgacatatttgtatatgaa-ggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaacaaactaactgaat |
25526166 |
T |
|
| Q |
309 |
gtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
389 |
Q |
| |
|
|||| | ||||||||||| || |||| ||| |||||||||||| ||||| |||||||||| ||||| ||||||||| |||| |
|
|
| T |
25526167 |
gtgtgcatttcatatgcagctatgtt-tctctaattgactcttccattcatagtcatgaacattggcaattactgaagatg |
25526246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 44461024 - 44461068
Alignment:
| Q |
142 |
cagctcctagagttgcatttgttgcgagcactcgaatcctcaaag |
186 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
44461024 |
cagctgctagagttgcatttgttgcaagcactccaatcctcaaag |
44461068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University