View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19126_low_6 (Length: 215)

Name: NF19126_low_6
Description: NF19126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19126_low_6
NF19126_low_6
[»] chr7 (15 HSPs)
chr7 (34-201)||(2338473-2338640)
chr7 (34-201)||(2330617-2330784)
chr7 (34-201)||(2322003-2322170)
chr7 (35-194)||(3954460-3954619)
chr7 (34-179)||(2326313-2326460)
chr7 (46-175)||(2335188-2335317)
chr7 (37-194)||(1549890-1550047)
chr7 (35-194)||(1089351-1089510)
chr7 (35-173)||(1605099-1605237)
chr7 (35-173)||(1556708-1556846)
chr7 (35-194)||(1563964-1564123)
chr7 (35-173)||(1106712-1106850)
chr7 (35-167)||(1540663-1540795)
chr7 (35-173)||(1597125-1597263)
chr7 (35-194)||(3853332-3853491)
[»] chr8 (4 HSPs)
chr8 (38-173)||(18738546-18738681)
chr8 (38-173)||(18743510-18743645)
chr8 (38-173)||(18748477-18748612)
chr8 (38-167)||(18722825-18722954)
[»] scaffold0491 (1 HSPs)
scaffold0491 (38-173)||(5318-5453)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 2338640 - 2338473
Alignment:
Q  34 ctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcaca 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338640 ctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcaca 2338541  T
Q  134 ttatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338540 ttatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactg 2338473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 2330784 - 2330617
Alignment:
Q  34 ctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcaca 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  2330784 ctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtccagtaaaacctttaca 2330685  T
Q  134 ttatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactg 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  2330684 ttatttggaagtgggagacgttggtctaatacttcacataatttcatcccttgagtcgatgctaactg 2330617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 2322170 - 2322003
Alignment:
Q  34 ctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcaca 133  Q
    ||||||| ||| |||||||| |||||||| | |||| ||||||||||||||  ||||||||| |  |||||||||||||||||||||||||||| |||||    
T  2322170 ctgtgacgcacatttcattgttggtcgagagaaaggattgagatttaagcaagcaaatgctattgtggcaacacgaattatgtcaagtaaaaccatcaca 2322071  T
Q  134 ttatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactg 201  Q
    ||||| |||||| | ||||| |||||||||||||||||||| || ||||||||||| |||||||||||    
T  2322070 ttattcggaagtagaagacgttggtctaatacttcacataacttaatgccttgagttgatgctaactg 2322003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 3954460 - 3954619
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    ||||||||||||||||||| ||||| || | |||| ||  ||||||||||| || ||||||||||  ||||| ||||||||||||||||||| |||||||    
T  3954460 tgtgacacacttttcattgttggtctagaggaaggatttggatttaagcatgcagatgctactacaacaacatgaattatgtcaagtaaaactttcacat 3954559  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatg 194  Q
     |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||    
T  3954560 catttggaagtgggagacgttggtctaatacttcacataatttgatgtcttgagttgatg 3954619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 2326460 - 2326313
Alignment:
Q  34 ctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaat--tatgtcaagtaaaaccttca 131  Q
    ||||||||||| |||||||| |||||||| | |||| |||||||||||| || |||||||||||| ||||||||||||  |||||||||||||||| |||    
T  2326460 ctgtgacacacatttcattgttggtcgagagaaaggattgagatttaagtatgcaaatgctactaaggcaacacgaattatatgtcaagtaaaaccatca 2326361  T
Q  132 cattatttggaagtgggagacgctggtctaatacttcacataatttca 179  Q
     ||||||  ||||||||||||| |||||||||||||||||||| ||||    
T  2326360 tattattcagaagtgggagacgttggtctaatacttcacataacttca 2326313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 2335317 - 2335188
Alignment:
Q  46 tttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattatttggaagt 145  Q
    |||||||| ||||| || |||||| ||||||||||||||| |||||||||| | | |||||||||||||||||||||||||| ||||||||||||||| |    
T  2335317 tttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaaaccatcacattatttggaaat 2335218  T
Q  146 gggagacgctggtctaatacttcacataat 175  Q
     || || | || ||||||||||||||||||    
T  2335217 aggggatgttgttctaatacttcacataat 2335188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 1549890 - 1550047
Alignment:
Q  37 tgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacatta 136  Q
    |||||||| |||||||| |||||||| || ||| ||||||||||| ||| |||||||||| ||||||||  ||||||||||| ||| |||  |  |||||    
T  1549890 tgacacacatttcattgttggtcgagagcgaggattgagatttaaacatgcaaatgctaccacggcaacttgaattatgtcacgtataactatttcatta 1549989  T
Q  137 tttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatg 194  Q
    ||||||||||| | ||| ||||||||||||| ||||||||| || | ||| |||||||    
T  1549990 tttggaagtggaatacgttggtctaatacttgacataatttgatactttgtgtcgatg 1550047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 1089510 - 1089351
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    |||||||||| |||||||| ||||||||  | ||| ||||||||||||||| |||||||||| ||||||||| ||||||||||| | | | |  |  | |    
T  1089510 tgtgacacacgtttcattgttggtcgagaacgaggattgagatttaagcatgcaaatgctaccacggcaacatgaattatgtcatggatagctatttctt 1089411  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatg 194  Q
    || |||||||||| ||||| ||||||||||||| ||||||||| || | ||| |||||||    
T  1089410 tacttggaagtggaagacgttggtctaatacttgacataatttgatactttgtgtcgatg 1089351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 1605237 - 1605099
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttca-ca 133  Q
    |||||||||| |||||||| ||||||||  | ||| |||| |||||||||| ||||||| || ||||||||| ||||||||||| ||| || || || |     
T  1605237 tgtgacacacgtttcattgttggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatgaattatgtcacgtataa-ctacatcg 1605139  T
Q  134 ttatttggaagtgggagacgctggtctaatacttcacata 173  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  1605138 ttatttggaagtggaagacgctggtctaatacttgacata 1605099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 1556708 - 1556846
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    |||||||||| |||||||| ||||||||    ||| |||| |||||||||| ||||||| || ||| ||||| ||||||||||| ||| |||  |  |||    
T  1556708 tgtgacacacgtttcattgttggtcgagaatgaggattgatatttaagcatgcaaatgcaaccacgacaacatgaattatgtcacgtataactatgtcat 1556807  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacata 173  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  1556808 tatttggaagtggaagacgctggtctaatacttgacata 1556846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 1563964 - 1564123
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    ||||| |||| |||||||| ||||||||  | ||| ||||||||||| | | |||||||||| ||||||||| ||||||||||| ||| |||  |  | |    
T  1563964 tgtgatacacatttcattgttggtcgagaacgaggattgagatttaaacttgcaaatgctaccacggcaacatgaattatgtcacgtataactatttcgt 1564063  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatg 194  Q
    ||||||||||| | ||||| ||||||||||||| ||||||||| || | ||| |||||||    
T  1564064 tatttggaagtcgaagacgttggtctaatacttgacataatttgatactttgtgtcgatg 1564123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 1106850 - 1106712
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    ||||| |||| |||||||| ||||||||  | ||| |||| |||||||||| ||||||| || ||||||||| ||||||||||| ||| |||     | |    
T  1106850 tgtgagacacgtttcattgttggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatgaattatgtcacgtataactacgtcgt 1106751  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacata 173  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  1106750 tatttggaagtggaagacgctggtctaatacttgacata 1106712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 1540663 - 1540795
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    |||||||||| |||||||| ||||||||  | ||| |||  |||||||||| |||||||||| | || |||| ||||||||||| ||| |||  |  |||    
T  1540663 tgtgacacacgtttcattgttggtcgagaacgaggattgccatttaagcatgcaaatgctaccagggaaacatgaattatgtcacgtataactatgtcat 1540762  T
Q  135 tatttggaagtgggagacgctggtctaatactt 167  Q
    ||||||||||||| ||||| |||||||||||||    
T  1540763 tatttggaagtggaagacgttggtctaatactt 1540795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 1597263 - 1597125
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    |||||||||| |||||||| ||||||||  | ||| |  | | |||||||| ||||||| |||| ||||||| ||||||||| | ||| |||  || |||    
T  1597263 tgtgacacacgtttcattgttggtcgagaacgaggatcaatagttaagcatgcaaatgcaactatggcaacatgaattatgtgacgtataactatctcat 1597164  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacata 173  Q
    ||||||||||||| ||||| ||||||||||||| |||||    
T  1597163 tatttggaagtggaagacgttggtctaatacttgacata 1597125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 3853491 - 3853332
Alignment:
Q  35 tgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacat 134  Q
    |||||||||| |||||||| |||||||| | |  || | || ||||| ||| |||||||||| || |||||  |||| |||| |||| ||||| || |||    
T  3853491 tgtgacacacatttcattgttggtcgagaggacaggcttaggtttaaacatgcaaatgctacgacagcaacctgaataatgtgaagtgaaaccatctcat 3853392  T
Q  135 tatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatg 194  Q
    |||||||| || ||||||| | ||||| |||||||| || ||| ||| ||||||| ||||    
T  3853391 tatttggacgttggagacgtttgtctagtacttcacgtagtttgatgtcttgagttgatg 3853332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 18738546 - 18738681
Alignment:
Q  38 gacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattat 137  Q
    ||||||| |||||||| ||||||||  | ||| |||| |||||||||| |||||||||| |||||| || ||||||||||| ||| |||  |  ||||||    
T  18738546 gacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatgtcacgtataactatgtcattat 18738645  T
Q  138 ttggaagtgggagacgctggtctaatacttcacata 173  Q
    |||||||||| ||||| ||||||||||||| |||||    
T  18738646 ttggaagtggaagacggtggtctaatacttgacata 18738681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 18743510 - 18743645
Alignment:
Q  38 gacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattat 137  Q
    ||||||| |||||||| ||||||||  | ||| |||| |||||||||| |||||||||| |||||| || ||||||||||| ||| |||  |  ||||||    
T  18743510 gacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatgtcacgtataactatgtcattat 18743609  T
Q  138 ttggaagtgggagacgctggtctaatacttcacata 173  Q
    |||||||||| ||||| ||||||||||||| |||||    
T  18743610 ttggaagtggaagacggtggtctaatacttgacata 18743645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 18748477 - 18748612
Alignment:
Q  38 gacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattat 137  Q
    ||||||| |||||||| ||||||||  | ||| |||| |||||||||| |||| || || ||||||| | ||||||||| | ||| |||| |  ||||||    
T  18748477 gacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgttacgtataaccatttcattat 18748576  T
Q  138 ttggaagtgggagacgctggtctaatacttcacata 173  Q
    |||||||||| ||||||||||||||||||| |||||    
T  18748577 ttggaagtggaagacgctggtctaatacttgacata 18748612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 18722825 - 18722954
Alignment:
Q  38 gacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattat 137  Q
    ||||||| |||||||| ||||||||  | ||| |||| |||||||||| |||| || || ||||||| | ||||||||| | ||| |||| |  ||||||    
T  18722825 gacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgttacgtataaccatttcattat 18722924  T
Q  138 ttggaagtgggagacgctggtctaatactt 167  Q
    |||||||||| |||||||||||||||||||    
T  18722925 ttggaagtggaagacgctggtctaatactt 18722954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 5318 - 5453
Alignment:
Q  38 gacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattat 137  Q
    ||||||| |||||||| ||||||||  | ||| |||| |||||||||| |||| || || ||||||| | ||||||||| | ||| |||| |  ||||||    
T  5318 gacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgttacgtataaccatttcattat 5417  T
Q  138 ttggaagtgggagacgctggtctaatacttcacata 173  Q
    |||||||||| ||||||||||||||||||| |||||    
T  5418 ttggaagtggaagacgctggtctaatacttgacata 5453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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