View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_high_12 (Length: 425)
Name: NF19127_high_12
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 31769594 - 31769994
Alignment:
| Q |
12 |
atcatcaacatagcctccctgacatagaatgaaaattagtaatgaaacatttaaagatacaagaagttgctaaagaaagtctccctctatataatatatc |
111 |
Q |
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| T |
31769594 |
atcatcaacatagcctccctgacatagaatgaaaatgagtaatgaaacatttaaagatacaagaagttgctaaagaaagtctccctccatatactatatc |
31769693 |
T |
|
| Q |
112 |
ataatataaagaacattaccggaatattataaagctaaaacaagcgaattaaattttaacaaacattatacagaaggaaggcaacattaccggaatgttc |
211 |
Q |
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| T |
31769694 |
ataatataaagaacattaccggaatattataaagctaaaacaagcgaattaaattttaacaaacattatacagaaggaaggcaacattaccggaatgttc |
31769793 |
T |
|
| Q |
212 |
atcatcttcctaagcttcctccttatgcagcaagtatagcaacaacaagataaaaccaacgaatatgtaataaagtcattgcatacttctgcagaagctg |
311 |
Q |
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| T |
31769794 |
atcatcttcctaagcttcctccttatgcagcaagtatagcaacaacaagataaaaccaacgaatatgcaataaagtcattgcatacttctgcagaagctg |
31769893 |
T |
|
| Q |
312 |
nnnnnnnntagaaaagtgaagttaaaagatcacaacctc--tatttttaagggtaacaaatgaaccagatagaatgaataatagaggcctgaaatatttg |
409 |
Q |
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| T |
31769894 |
aaaaaaaatagaaaagtgaagttaaaagatcacaacctcaatatttttaagggtaacaaatgaaccagatagaatgaataatagaggcctgaaatatttg |
31769993 |
T |
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| Q |
410 |
t |
410 |
Q |
| |
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| T |
31769994 |
t |
31769994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 8966966 - 8966839
Alignment:
| Q |
184 |
gaaggaaggcaacattaccggaatgttcatcatcttcctaagcttcctccttatgcagcaagtatagcaacaacaagataaaaccaacgaatatgtaata |
283 |
Q |
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||||||||| | |||||| | ||||| | |||||||| |||||| ||||| ||||| ||||||||||||||||| || |||| || ||||||| || |
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| T |
8966966 |
gaaggaaggaatcattactgtgatgtttaacatcttccgaagctttctcctaatgcaacaagtatagcaacaacaggacaaaattaatgaatatgccatc |
8966867 |
T |
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| Q |
284 |
aagtcattgcatacttctgcagaagctg |
311 |
Q |
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| T |
8966866 |
aattcattacatgcttctgcagaggctg |
8966839 |
T |
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