View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_high_2 (Length: 838)
Name: NF19127_high_2
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 63 - 822
Target Start/End: Complemental strand, 46524188 - 46523446
Alignment:
| Q |
63 |
aggagagagtaatacttaataacttaattcggggattacacttatcagtttagtttgagtggttttgtatgtgggttattgacatgatactgatgtagga |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46524188 |
aggagagagtaatacttaataacttaattcggggattacacttatcagtttagtttgagtggttttttatgtgggttattgacatgatactgatgtagga |
46524089 |
T |
|
| Q |
163 |
ttagtggattactaaacgcctgtttggatagatttatttgagaggatttatggtttgtgagattgtttaatagaatttaggagcttgttttgagatgctt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46524088 |
ttagtggattactaaacgcctgtttggatagatttatttgagaggatttatggtttgtgagattgtttaatagaatttaggaggttgttttgagatgctt |
46523989 |
T |
|
| Q |
263 |
attttcataagctcttcgaatagtatgtgaaaataacttaaaacttatataagaacagtttaactttagtttatcttctactataagcacttgatcaaga |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46523988 |
attttcataagctcttcgaatagtatgtgaaaataacttaaaacttatacaagaacagtttaactttagtttatcttctactataagcacttgatcaaga |
46523889 |
T |
|
| Q |
363 |
nnnnnnnnggtggtgtccaactagaagaccgaaattggcacgcgaaaattggactctcaacttgaaaggaacacatgccggttccaagacaacaccatca |
462 |
Q |
| |
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| | |||| |||||| ||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
46523888 |
ttttttttgaagatgtcaaactagcagaccgaaattggcatgcgaaaatcgaactctcaccttgaaaggaacacatgccggttccaagacaacaccacca |
46523789 |
T |
|
| Q |
463 |
aaccaacccaagtggatttaatacttgattaacttgtttatttaagtagagtctaaatcaaaagaggaaaccttatggttgatcagttaattctaaaagc |
562 |
Q |
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| T |
46523788 |
aaccaacccaagtggatttaatacttgattaacatgtttatttaagtagagtctaaatcaaaagaggaaaccttatggttgatcagttaattctaaaagc |
46523689 |
T |
|
| Q |
563 |
aagcatgactcaacttaatatagaatgacatgttgtgcattttgtcagggagtaatattgattattgaatacgttagggtgaagttctcttattttggat |
662 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46523688 |
aagcatgactcaacttaatatagaatgacatgttgtgcattttgtcagagagtaatattgattattgaatacgttagggtgaagttctcttattttggat |
46523589 |
T |
|
| Q |
663 |
ctgcatcaactttagaattgtatgacatcataatagtcatgacatcataatggtcatgaatgtagaagttaatgaatcgtctcgtgaagctccaatataa |
762 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46523588 |
ctgcatcaactttagaattgtatgacatca-----------------taatggtcatgaatgtagaagttaatgaatcgtctcgtgaagctccaatataa |
46523506 |
T |
|
| Q |
763 |
tgttttgaaacagagttctttgtttgtctaaaatgaagtggaaagttgctgtaatgatag |
822 |
Q |
| |
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|
| T |
46523505 |
tgttttgaaacaaagttctttgtttgtctaaaatgaagtggaaagttgctgtaatgatag |
46523446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 115 - 704
Target Start/End: Complemental strand, 46531719 - 46531134
Alignment:
| Q |
115 |
gtttgagtggttttgtatgtgggttattgacatgatactgatgtaggattagtggattactaaacgcctgtttggatagatttatttgagaggatttatg |
214 |
Q |
| |
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||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| | |
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| T |
46531719 |
gtttgagtggtgtttgatgtgggctattgacatgatactgatgtaggatcagtggattactaaacgcctgttgggatagatttaattgagaggatttacg |
46531620 |
T |
|
| Q |
215 |
gtttgtgagattgtttaatagaatttaggagcttgttttgagatgcttattttcataagctcttcgaatagtatgtgaaaataacttaaaacttatataa |
314 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||| | || |||||||| | |||||||||||| |
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| T |
46531619 |
gtttgtgagattgtttaatagaatttaggaggttcttttgagattcttattttcataagctcttcaaatggcatctgaaaatacc---aaacttatataa |
46531523 |
T |
|
| Q |
315 |
gaacagtttaactttagtttatcttctactataagcacttgatcaagannnnnnnnggtggtgtccaactagaagaccgaaattggcacgcgaaaattgg |
414 |
Q |
| |
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|||||||| |||||| |||||||| | ||||||||||||||| ||| | || |||||| |||||||||| ||| ||| || | |
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| T |
46531522 |
aaacagtttgactttattttatcttttgctataagcacttgattaaggtattttttaa-gaactcgaactagcccaccgaaattgacacaagaatatcga |
46531424 |
T |
|
| Q |
415 |
a-ctctcaacttgaaaggaacacatgccggttccaagacaacaccatcaaaccaacccaagtggatttaatacttgattaacttgtttatttaagtagag |
513 |
Q |
| |
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| |||||| |||| ||||||||| ||||| ||||||| |||||| || ||||||||||||| ||||| |||||||| ||||||||||||||| ||| |
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| T |
46531423 |
atctctcagtttgagaggaacacactccggtcccaagacgacaccaccaggccaacccaagtgggtttaacacttgattgacttgtttatttaag--gag |
46531326 |
T |
|
| Q |
514 |
tctaaatcaaaagaggaaaccttatgg-ttgatcagttaattctaaaagcaagcatgactcaacttaatatagaatgacatgttgtgcattttgtcaggg |
612 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
46531325 |
tctaaatcaaaagaggaaaccttatgggttgatcagttaattctagaagcaagcatgactcagtttaatatagattgacatgttgtgcattttgttaggg |
46531226 |
T |
|
| Q |
613 |
agtaatattgattattgaatacgttagggtgaagttctcttattttggatctgcatcaactttagaattgtatgacatcataatagtcatga |
704 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
46531225 |
agtaattttgattattgaatatgttagggtgaagttctcttattttgggtctgcatcaactttagaatagtatgacatcataatggtcatga |
46531134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 509 - 575
Target Start/End: Original strand, 46323347 - 46323413
Alignment:
| Q |
509 |
tagagtctaaatcaaaagaggaaaccttatggttgatcagttaattctaaaagcaagcatgactcaa |
575 |
Q |
| |
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||||| ||||||||||| |||| ||||||||| |||||||||||||||| | |||||||||||| |
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| T |
46323347 |
tagagcctaaatcaaaatcggaacatttatggttgctcagttaattctaaaacccagcatgactcaa |
46323413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 500 - 696
Target Start/End: Original strand, 7476106 - 7476296
Alignment:
| Q |
500 |
ttatttaagtagagtctaaatcaaaagaggaaaccttatggttgatcagttaattctaaaagcaagcatgactca-acttaatatagaatgacatgttgt |
598 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| || |||||||| ||||| ||| || |
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|
| T |
7476106 |
ttatttaagtatagtctagatcaaaagaggaaaccttatggtggatc-----attctagaagcaagcatgacacagttttaatatataatgatttgtggt |
7476200 |
T |
|
| Q |
599 |
gcattttgtcagggagtaatattgattattgaatacgtta-gggtgaagttctcttattttggatctgcatcaactttagaattgtatgacatcataat |
696 |
Q |
| |
|
||||||||| ||||||||||||||| ||| | || | || ||| |||| |||||| |||| ||| |||||||||||| |||| ||||||||||||| |
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|
| T |
7476201 |
gcattttgt-agggagtaatattgaatat--attagggtaccggtcgagttgtcttatgttgggtctccatcaactttagcattgcatgacatcataat |
7476296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 733 - 822
Target Start/End: Original strand, 7493073 - 7493162
Alignment:
| Q |
733 |
aatgaatcgtctcgtgaagctccaatataatgttttgaaacagagttctttgtttgtctaaaatgaagtggaaagttgctgtaatgatag |
822 |
Q |
| |
|
||||||| || |||| ||||||||||||||| ||||||| |||| | |||||||||| ||||| |||||||||||||| ||||| ||||| |
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|
| T |
7493073 |
aatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaagaagtggaaagttgatgtaacgatag |
7493162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 733 - 810
Target Start/End: Original strand, 7476383 - 7476460
Alignment:
| Q |
733 |
aatgaatcgtctcgtgaagctccaatataatgttttgaaacagagttctttgtttgtctaaaatgaagtggaaagttg |
810 |
Q |
| |
|
||||||| || |||| ||||||||||||||| ||||||| |||| | |||||||||| ||||| |||||||||||||| |
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|
| T |
7476383 |
aatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaagaagtggaaagttg |
7476460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 7475771 - 7475831
Alignment:
| Q |
247 |
ttgttttgagatgcttattttcataagctcttcgaatagtatgtgaaaataacttaaaact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| |
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|
| T |
7475771 |
ttgttttgagatgcttattttcataagctcttcaaatagcacatgaaaataacataaaact |
7475831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 7492788 - 7492839
Alignment:
| Q |
496 |
ttgtttatttaagtagagtctaaatcaaaagaggaaaccttatggttgatca |
547 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| || ||||| |
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|
| T |
7492788 |
ttgtttatttaagtatagtctagatcaaaagaggaaaccttatagtggatca |
7492839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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