View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_high_27 (Length: 290)
Name: NF19127_high_27
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 276
Target Start/End: Original strand, 36296848 - 36297089
Alignment:
| Q |
35 |
tccaacattcttcaataaaaatgatatagatattttgaagactattccagggtttccaatgttttcaaaggtaacaaattagtctctattgatgaaaatg |
134 |
Q |
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| T |
36296848 |
tccaacattcttcaacaaaaatgatatagatattttgaagactattccagggtttccaatgttttcaaaggtaacaaattagtctctattgattaaaatg |
36296947 |
T |
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| Q |
135 |
tctgtagtaagttatccaatgcattaatacactcggcacatcagtgactgttggatagagatcggacagtctagatttcaatgcatattttgacatgaaa |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36296948 |
tctgtagtaagttatccaatgcattaatacactcggcacatcagtgactgttggatagagatcggacagtctagatttcaatgcatattttgacatggaa |
36297047 |
T |
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| Q |
235 |
gaacatgttttatgtgaatgtaacttctctatgaaggtaatg |
276 |
Q |
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| T |
36297048 |
gaacatgttttatgtgaatgtaacttctctatgaaggtaatg |
36297089 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 48299791 - 48299716
Alignment:
| Q |
40 |
cattcttcaataaaaatgatatagatattttgaagactattccagggtttccaatgttttcaaaggtaacaaatta |
115 |
Q |
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| T |
48299791 |
cattcttcagcaaaaatgatattgatattttgaagacacttcctaagttcccaatgtttacaaaggtaaaaaatta |
48299716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 1145293 - 1145249
Alignment:
| Q |
182 |
ctgttggatagagatcggacagtctagatttcaatgcatattttg |
226 |
Q |
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| T |
1145293 |
ctgttggatcgatatctgacagtttagatttcaatgcatattttg |
1145249 |
T |
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