View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_high_30 (Length: 270)
Name: NF19127_high_30
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 13849400 - 13849147
Alignment:
| Q |
1 |
atcaagaacttcttcataggagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacg |
100 |
Q |
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| T |
13849400 |
atcaagaacttcttcataggagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacg |
13849301 |
T |
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| Q |
101 |
gcagagatggtggcggtggaagagaggagaatggcgcgtgagagtttgcgggctatgtcggcgcaaccgagaatgccgaaacggattggttcagtttgtg |
200 |
Q |
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| T |
13849300 |
gcagagatggtggcggtggaagagaggagaatggcgcgtgagagtttgcgggctatgtcggcgcaaccgagaatgccgaaacggattggttcagtttgtg |
13849201 |
T |
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| Q |
201 |
acattgttttggtgataaatgttttgcggtttgagggagggagtggtcataaat |
254 |
Q |
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| T |
13849200 |
acattgttttggtgataaatgttttgcggtttgagggagggagtggtcataaat |
13849147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 13855189 - 13854973
Alignment:
| Q |
2 |
tcaagaacttcttcataggagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacgg |
101 |
Q |
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| T |
13855189 |
tcaagaacttcttcgtaagagccgtagactttggcggtgggacggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacgg |
13855090 |
T |
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| Q |
102 |
cagagatggtggcggtggaagagaggagaatggcgcgtgagagtttgcgggctatgtcggcgcaaccgagaatgccgaaacggattggttcagtttgtga |
201 |
Q |
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| T |
13855089 |
cggagattgtggcggtggaagagaggagaatggtgcgtgagagtttgcgggctatgtccgcgcaaccgagaatgccgaaacgaattggctctgtttgtga |
13854990 |
T |
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| Q |
202 |
cattgttttggtgataa |
218 |
Q |
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| T |
13854989 |
cattatgatggtgataa |
13854973 |
T |
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