View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19127_high_36 (Length: 243)
Name: NF19127_high_36
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_high_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45281164 - 45281396
Alignment:
| Q |
1 |
aactcctctgattacatgatgatggacctgttaagtaagaatgtgcaaaatatgacgtttttaagttagaaaagtgtgtatggatgccatgagttagcct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45281164 |
aactcctctgattacatgatgatgtacctgttaagtaagaatgtgcaaaatatgacgtttttaagttagaaaagtgtgtatggatgccatgagttagcct |
45281263 |
T |
|
| Q |
101 |
ttcgtagagtgagattagggttttactatccaaaactctagccgagacaactacctccttagacacctatgagtggattaggatgggacaacattggact |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45281264 |
t-cgtagagtgagattagggttttactatccaaaactctagccgagataattacctccttagacacctatgagtggattaggatgggacaacattggact |
45281362 |
T |
|
| Q |
201 |
gggatccgatgagagagaggaccttgatgatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45281363 |
tggatccgatgagagagaggaccttgatgatgtc |
45281396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University