View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_high_5 (Length: 576)
Name: NF19127_high_5
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 39776953 - 39777493
Alignment:
| Q |
19 |
tctggttttctaaaactcttataacatgcatttgccgatgctaatattaactttttcttggatatgatgaaaattactgaaagcctttgaattgaaccac |
118 |
Q |
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| T |
39776953 |
tctggttttctaaaactcttataacatgcatttgccgatgctaatattaactttttcttggatatgatgaaaattactgaaagcctttgaattgaaccac |
39777052 |
T |
|
| Q |
119 |
ttatcacaggaattactcccaggagattccaagtgatgtcgctattcaaattggcgaagcttcctattcgttacacaaggtagtcaacaaactcaaacat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39777053 |
ttatcacaggaattactcccaggagattccaagtgatgtcgctattcaaattggcgaagcttcctattcgttacacaaggtagtcaacaaactcaaatat |
39777152 |
T |
|
| Q |
219 |
caaacttactaatcataggatcattaaatggagagtaatgaattctagtacttggttctgttttttcaatcaattctttgcnnnnnnnatgatacaacat |
318 |
Q |
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| T |
39777153 |
caaacttacta-----------actaaatggagagtaatgaattctagtacttggttctgttttttcaatcaattctttgctttttttatgatacaacat |
39777241 |
T |
|
| Q |
319 |
tatgatgtcgtttgatctatttagttgactccgcatattggttgttcatgcaattcttagtannnnnnnnnnnnnnnnnnnatcaagaatagtaatagga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39777242 |
tatgatgtcgtttgatctatttagttgactccgcatattggttgttcatgcaattcttagtattttcttttttctttttttatcaagaatagtaatagga |
39777341 |
T |
|
| Q |
419 |
aaatataagtgatatatgtatagacatagtactttaagctgtttattgaattatttttcataactctaacgtaatttgcagtttccattaatttccaaaa |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39777342 |
aaatataagtgatatatgtatagacatagtactttaagctgtttattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaa |
39777441 |
T |
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| Q |
519 |
gtggatacataaggaagctcatttcagaatctagtgatgctgttgatgatgt |
570 |
Q |
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| T |
39777442 |
gtggatacataaggaagctcatttcagaatctagtgatgctgttgatgatgt |
39777493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Original strand, 1381228 - 1381263
Alignment:
| Q |
307 |
atgatacaacattatgatgtcgtttgatctatttag |
342 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
1381228 |
atgatataacattatgatgtcgtttgatctatttag |
1381263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 165 - 361
Target Start/End: Complemental strand, 47799058 - 47798862
Alignment:
| Q |
165 |
caaattggcgaagcttcctattcgttacacaaggtagtcaacaaactcaaacatcaaacttactaatcataggatcattaaatggagagtaatgaattct |
264 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||||||| |||||||||||||||||||||| |||| |
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| T |
47799058 |
caaattggtgaagcttcctattcgttacacaaggtagggaacaaattcaaatatcaaaattactaatcataatatcattaaatggagagtaatgatttct |
47798959 |
T |
|
| Q |
265 |
agtacttggttctgttttttcaatcaattctttgcnnnnnnnatgatacaacattatgatgtcgtttgatctatttagttgactccgcatattggtt |
361 |
Q |
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||| |||||| ||||||||||||||||| ||| | ||||| ||||||||||||| ||||||||||| ||||||||||| ||||| |||| |
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| T |
47798958 |
agtccttggtaatgttttttcaatcaattatttccacctttgttgatagaacattatgatgtggtttgatctatgtagttgactccacatataggtt |
47798862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 461 - 570
Target Start/End: Complemental strand, 47798759 - 47798650
Alignment:
| Q |
461 |
ttattgaattatttttcataactctaacgtaatttgcagtttccattaatttccaaaagtggatacataaggaagctcatttcagaatctagtgatgctg |
560 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
47798759 |
ttattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctg |
47798660 |
T |
|
| Q |
561 |
ttgatgatgt |
570 |
Q |
| |
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||| |||||| |
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| T |
47798659 |
ttgctgatgt |
47798650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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