View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19127_high_9 (Length: 440)

Name: NF19127_high_9
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19127_high_9
NF19127_high_9
[»] scaffold0316 (2 HSPs)
scaffold0316 (1-157)||(7086-7244)
scaffold0316 (257-424)||(6818-6986)
[»] chr6 (2 HSPs)
chr6 (1-157)||(11973709-11973867)
chr6 (257-422)||(11973968-11974134)
[»] scaffold0003 (2 HSPs)
scaffold0003 (323-383)||(191679-191739)
scaffold0003 (257-291)||(191774-191808)
[»] chr3 (2 HSPs)
chr3 (323-383)||(11818661-11818721)
chr3 (323-378)||(41758299-41758354)
[»] scaffold0356 (1 HSPs)
scaffold0356 (323-383)||(3979-4039)
[»] chr8 (4 HSPs)
chr8 (323-383)||(14106556-14106616)
chr8 (323-378)||(33856317-33856372)
chr8 (315-383)||(7781791-7781860)
chr8 (315-383)||(7831065-7831134)
[»] chr4 (2 HSPs)
chr4 (323-378)||(31926697-31926752)
chr4 (315-383)||(37525278-37525347)
[»] chr1 (3 HSPs)
chr1 (315-381)||(16046878-16046945)
chr1 (323-383)||(28968383-28968443)
chr1 (396-424)||(28968334-28968362)
[»] chr5 (2 HSPs)
chr5 (315-383)||(2255797-2255866)
chr5 (396-424)||(2255887-2255915)


Alignment Details
Target: scaffold0316 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7244 - 7086
Alignment:
Q  1 atcagtacacctttcgtctcatttttattatgattataaagcaaggatgttaaattttacttgacaacatgagctatgtcgttttgtaac--nnnnnnnn 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  7244 atcagtacacctttcgtctcatttttattatgattataaagcaaggatgttaaattttacttgacaacatgagccatgtcgttttgtaacaaaaataaaa 7145  T
Q  99 nntgagctatgtcgttttcacaattaactaatattagtcaaattattttcgacattcat 157  Q
       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7144 aaagagctatgtcgttttcacaattaactaatattagtcaaattattttctacattcat 7086  T

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Target: scaffold0316; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 257 - 424
Target Start/End: Complemental strand, 6986 - 6818
Alignment:
Q  257 aataaagatgtacattatgagtatttgtttcccctnnnnnnntcatgagtannnnnnn-ctttctaatttaatcatacaaattgttgataattaatgtac 355  Q
    |||||||||||||||||||||||||||||||||||       |||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  6986 aataaagatgtacattatgagtatttgtttcccctaaaaaaatcatgagtattttttttctttctaatttaatcatacaaattgttgataattaatgtac 6887  T
Q  356 catttaattgtcaattactacatccatagaannnnnnnngtgattgcttcatacatgttggctataaat 424  Q
    ||||||||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||    
T  6886 catttaattgtcaattactacatccgtagaattttttttgtgattgcttcatacatgttggctataaat 6818  T

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Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11973709 - 11973867
Alignment:
Q  1 atcagtacacctttcgtctcatttttattatgattataaagcaaggatgttaaattttacttgacaacatgagctatgtcgttttgtaac--nnnnnnnn 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  11973709 atcagtacacctttcgtctcatttttattatgattataaagcaaggatgttaaattttacttgacaacatgagccatgtcgttttgtaacaaaaataaaa 11973808  T
Q  99 nntgagctatgtcgttttcacaattaactaatattagtcaaattattttcgacattcat 157  Q
       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11973809 aaagagctatgtcgttttcacaattaactaatattagtcaaattattttctacattcat 11973867  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 257 - 422
Target Start/End: Original strand, 11973968 - 11974134
Alignment:
Q  257 aataaagatgtacattatgagtatttgtttcccctnnnnnnntcatgagtannnnnnn-ctttctaatttaatcatacaaattgttgataattaatgtac 355  Q
    |||||||||| |||| |||||||||||||||||||       |||||||||        |||| ||||||||||||||||||||||||||||||||||||    
T  11973968 aataaagatgcacatcatgagtatttgtttcccctaaaaaaatcatgagtattttttttctttttaatttaatcatacaaattgttgataattaatgtac 11974067  T
Q  356 catttaattgtcaattactacatccatagaannnnnnnngtgattgcttcatacatgttggctataa 422  Q
     ||||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||    
T  11974068 aatttaattgtcaattactacatccatagaattttttttgtgattgcttcatacatgtttgctataa 11974134  T

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Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 191739 - 191679
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  191739 tttaatcatacaaattgttgataattaatgtacaatttaattatcaattactacatccata 191679  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 191808 - 191774
Alignment:
Q  257 aataaagatgtacattatgagtatttgtttcccct 291  Q
    ||||||||||||||| |||||||||||||||||||    
T  191808 aataaagatgtacatcatgagtatttgtttcccct 191774  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 11818721 - 11818661
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  11818721 tttaatcatacaaattgttgataattattgtacaatttaattatcaattactacatccata 11818661  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 41758299 - 41758354
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacat 378  Q
    ||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||    
T  41758299 tttaatcatactaattgttgataattaatgtaccaatttattttcaattactacat 41758354  T

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Target: scaffold0356 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 3979 - 4039
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||| ||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  3979 tttaatcatactaattgttgataattaatgttccaatttattttcaattactacatccata 4039  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 14106556 - 14106616
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||| ||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  14106556 tttaatcatactaattgttgataattaatgttccaatttattttcaattactacatccata 14106616  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 33856317 - 33856372
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacat 378  Q
    ||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||    
T  33856317 tttaatcatactaattgttgataattaatgtaccaatttattttcaattactacat 33856372  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 7781860 - 7781791
Alignment:
Q  315 ctttctaattt-aatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||| ||||||| ||||| |||| |||||||||||||||| ||| |||||||||  |||||||    
T  7781860 ctttctaattttaatcatataaatttttgaaaattaatgtaccattttattttcaattactctatccata 7781791  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 7831134 - 7831065
Alignment:
Q  315 ctttctaattt-aatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||| ||||||| ||||| |||| |||||||||||||||| ||| |||||||||  |||||||    
T  7831134 ctttctaattttaatcatataaatttttgaaaattaatgtaccattttattttcaattactctatccata 7831065  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 31926752 - 31926697
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacat 378  Q
    ||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||    
T  31926752 tttaatcatactaattgttgataattaatgtaccaatttattttcaattactacat 31926697  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 37525278 - 37525347
Alignment:
Q  315 ctttctaattt-aatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||| ||||||| ||||| |||| ||||||||||| |||| ||| |||||||||| |||||||    
T  37525278 ctttctaattttaatcatataaatttttgaaaattaatgtacaattttattttcaattactatatccata 37525347  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 16046945 - 16046878
Alignment:
Q  315 ctttctaattt-aatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatcca 381  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| || ||  ||||||||||||||||    
T  16046945 ctttctaattttaatcatactaattgttgataattaatgtaccaatttatcttcaattactacatcca 16046878  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 28968443 - 28968383
Alignment:
Q  323 tttaatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||  |||| |||| |||||||||||||||| ||| |||||||||| |||||||    
T  28968443 tttaatcatatcaatttttgaaaattaatgtaccattttattttcaattactatatccata 28968383  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Complemental strand, 28968362 - 28968334
Alignment:
Q  396 tgattgcttcatacatgttggctataaat 424  Q
    |||||||||||||||||||||||||||||    
T  28968362 tgattgcttcatacatgttggctataaat 28968334  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 2255797 - 2255866
Alignment:
Q  315 ctttctaattt-aatcatacaaattgttgataattaatgtaccatttaattgtcaattactacatccata 383  Q
    ||||||||||| ||||||| ||||| |||| ||||||||||| |||| ||| |||||||||| |||||||    
T  2255797 ctttctaattttaatcatataaatttttgaaaattaatgtacaattttattttcaattactatatccata 2255866  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 2255887 - 2255915
Alignment:
Q  396 tgattgcttcatacatgttggctataaat 424  Q
    |||||||||||||||||||||||||||||    
T  2255887 tgattgcttcatacatgttggctataaat 2255915  T

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