View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_12 (Length: 431)
Name: NF19127_low_12
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 32505031 - 32504633
Alignment:
| Q |
19 |
cctacaacatcacactttaatgtgatagtacccgattttggtggattttcgcacatgtccaatacatttcttgtacactgattggatctgtataaactaa |
118 |
Q |
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| T |
32505031 |
cctacaacatcacactttaatgtgatagtacccgattttagtggattttcgcacatgtccaatacatttcttgtacactgattggatctgtataaactaa |
32504932 |
T |
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| Q |
119 |
gtggactcaattcgtccatgcatattatatgaccgaaggagcaacaagtaaataataataatttagcatcaagtcatcaaccaccttattgattaatttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32504931 |
gtggactcaattcgtccatgcatattatatgaccgaaggagcaacaagtaaataataat---ttagcatcaagtcatcaaccaccttattgattaatttg |
32504835 |
T |
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| Q |
219 |
attccgtccaaaaaacaaatttaattgcttttgcatgtgaaaattgtacaggatacggtccattgaaatgtataagattggtgtgtattaatatcatatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504834 |
attccgtccaaaaaacaaatttaattgcttttgcatgtgaaaattgtacaggatacggtccattgaaatgtataagattggtgtgtattaatatcatatc |
32504735 |
T |
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| Q |
319 |
attctcttcactcttcagagatcaaaccggcaccaacatgcattatggagctgtcctactctcaaacacgaatttaaggcaggcattttgttcttctttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504734 |
attctcttcactcttcagagatcaaaccggcaccaacatgcattatggagctgtcctactctcaaacacgaatttaaggcaggcattttgttcttctttc |
32504635 |
T |
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