View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19127_low_15 (Length: 421)

Name: NF19127_low_15
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19127_low_15
NF19127_low_15
[»] chr4 (12 HSPs)
chr4 (17-258)||(8745798-8746048)
chr4 (101-262)||(48861736-48861897)
chr4 (17-193)||(48840986-48841166)
chr4 (131-194)||(52628085-52628148)
chr4 (9-76)||(43892598-43892665)
chr4 (20-86)||(48861920-48861986)
chr4 (142-174)||(22785968-22786000)
chr4 (142-173)||(6016935-6016966)
chr4 (143-194)||(54166187-54166238)
chr4 (142-172)||(2407097-2407127)
chr4 (17-86)||(17816064-17816133)
chr4 (132-172)||(16608601-16608641)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-262)||(292352-292606)
[»] chr1 (18 HSPs)
chr1 (17-262)||(11142418-11142672)
chr1 (17-262)||(10177646-10177897)
chr1 (17-263)||(19313128-19313381)
chr1 (101-262)||(23614378-23614539)
chr1 (17-265)||(10406272-10406526)
chr1 (142-209)||(44960870-44960941)
chr1 (17-76)||(10620066-10620125)
chr1 (17-76)||(15757679-15757738)
chr1 (20-86)||(23614562-23614628)
chr1 (17-86)||(1600670-1600739)
chr1 (131-202)||(5184913-5184984)
chr1 (159-259)||(1600797-1600896)
chr1 (132-172)||(29357169-29357209)
chr1 (17-84)||(52111098-52111163)
chr1 (135-181)||(29799171-29799217)
chr1 (21-86)||(44961381-44961446)
chr1 (135-171)||(21972265-21972301)
chr1 (142-190)||(47367678-47367726)
[»] chr3 (13 HSPs)
chr3 (101-262)||(16152039-16152200)
chr3 (263-325)||(48523734-48523795)
chr3 (142-262)||(11033981-11034101)
chr3 (349-395)||(48523661-48523707)
chr3 (23-86)||(11027973-11028036)
chr3 (131-190)||(52403485-52403544)
chr3 (20-86)||(16152223-16152289)
chr3 (17-76)||(17653071-17653130)
chr3 (17-76)||(21295935-21295994)
chr3 (17-76)||(46823807-46823866)
chr3 (142-174)||(20843312-20843344)
chr3 (132-202)||(35061855-35061925)
chr3 (145-179)||(40763748-40763782)
[»] chr8 (14 HSPs)
chr8 (17-198)||(43115014-43115203)
chr8 (17-88)||(38699848-38699919)
chr8 (131-259)||(41570169-41570297)
chr8 (17-84)||(13541518-13541585)
chr8 (17-84)||(13682888-13682955)
chr8 (17-76)||(21441677-21441736)
chr8 (159-209)||(13541645-13541695)
chr8 (159-209)||(13682778-13682828)
chr8 (17-76)||(41323265-41323324)
chr8 (220-262)||(43114947-43114989)
chr8 (17-76)||(4072311-4072370)
chr8 (218-261)||(38700053-38700096)
chr8 (135-172)||(5808870-5808907)
chr8 (17-86)||(6115029-6115098)
[»] chr5 (9 HSPs)
chr5 (101-262)||(34033815-34033976)
chr5 (17-86)||(41640152-41640221)
chr5 (17-76)||(17769060-17769119)
chr5 (132-194)||(22098928-22098990)
chr5 (17-76)||(13517501-13517560)
chr5 (142-195)||(16908871-16908924)
chr5 (101-170)||(41640246-41640315)
chr5 (101-201)||(17698708-17698808)
chr5 (38-86)||(34034000-34034048)
[»] scaffold1709 (2 HSPs)
scaffold1709 (101-264)||(1224-1388)
scaffold1709 (47-86)||(1412-1451)
[»] chr2 (4 HSPs)
chr2 (101-209)||(4435053-4435161)
chr2 (7-86)||(4435185-4435264)
chr2 (138-181)||(16546287-16546330)
chr2 (142-174)||(45656071-45656103)
[»] chr7 (15 HSPs)
chr7 (103-262)||(29716022-29716181)
chr7 (17-86)||(29715929-29715998)
chr7 (132-202)||(45855377-45855447)
chr7 (17-76)||(39719882-39719941)
chr7 (17-76)||(48609189-48609248)
chr7 (138-179)||(13465393-13465434)
chr7 (131-195)||(34658913-34658977)
chr7 (131-190)||(25591954-25592013)
chr7 (142-179)||(25439686-25439723)
chr7 (17-86)||(25592068-25592137)
chr7 (145-174)||(28491255-28491284)
chr7 (17-69)||(83716-83768)
chr7 (17-73)||(758835-758891)
chr7 (293-329)||(6428208-6428244)
chr7 (17-73)||(46211761-46211817)
[»] scaffold0110 (1 HSPs)
scaffold0110 (131-194)||(7119-7182)
[»] scaffold0002 (1 HSPs)
scaffold0002 (101-190)||(428539-428629)
[»] scaffold0481 (3 HSPs)
scaffold0481 (17-86)||(6615-6684)
scaffold0481 (103-198)||(6496-6591)
scaffold0481 (220-262)||(6431-6473)
[»] chr6 (11 HSPs)
chr6 (19-84)||(27673981-27674046)
chr6 (132-190)||(22956659-22956717)
chr6 (132-190)||(23831675-23831733)
chr6 (17-86)||(22956535-22956604)
chr6 (17-86)||(23831788-23831857)
chr6 (159-259)||(27673821-27673921)
chr6 (132-172)||(33224587-33224627)
chr6 (17-76)||(34729778-34729837)
chr6 (135-172)||(904250-904287)
chr6 (142-179)||(1780768-1780805)
chr6 (132-169)||(8560116-8560153)
[»] scaffold1554 (1 HSPs)
scaffold1554 (17-86)||(722-790)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 8745798 - 8746048
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct---------gtggtaannnnnnnactttat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||||||        |||||||    
T  8745798 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacaaataaatctatcagtcttgtggtattttttttactttat 8745897  T
Q  108 tatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataa 207  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||    
T  8745898 tatttatgtaaatttttgtgacggaacttatttggagtagctcaatgtttattatttgaggtagccagatataagtacataccgaccactttaagtataa 8745997  T
Q  208 tannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcc 258  Q
    ||        | ||||||||| |||||||||||||||||||||||||||||    
T  8745998 tattttttctggggtagccaaggctacccctcccatgtgaagggctacgcc 8746048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 48861897 - 48861736
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||||||||||||||  ||||||||  ||  ||||||||| |||||||| |||||||||||||||||||||||| |||||| || |||||||  | ||||    
T  48861897 actttattatttatgctaatttttgcaactaaacttatttggggtagcttaatgtttattatttggggtagccgaatataaatatataccgattaattca 48861798  T
Q  201 agtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    || ||||||        | ||||||||| |||||||||||||| ||||||||||||||||||    
T  48861797 agaataatactttttttggggtagccaaggctacccctcccatatgaagggctacgcccctg 48861736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 48841166 - 48840986
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatc---------tgtggtaannnnnnnactttat 107  Q
    |||||||||||||||| ||||||     ||||||||||||||| |||||||||||||||| ||||||||         ||| ||||       |||||||    
T  48841166 ttattgttgaaaaaggtttctct-----tgttattgagatcggaagtatcaaaccaatacaaataaatccatcaatcttgtagtaacttttttactttat 48841072  T
Q  108 tatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgac 193  Q
    ||||||||  |||||||   | ||||| | ||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  48841071 tatttatgctaatttttacaatggaacgtgtttggggtagctcaatgtttattatttagggtagccggatataaatacataccgac 48840986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 52628148 - 52628085
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgacc 194  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  52628148 gaacttgtttggggtagctcaatgtttattatttgaggtagccggatataaatacataccgacc 52628085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 43892598 - 43892665
Alignment:
Q  9 gattattcttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||  || ||||||||||||||||    
T  43892598 gattatttttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatac 43892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 48861986 - 48861920
Alignment:
Q  20 ttgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||||||||||| |||| ||||||||||||||||| ||  | |||||||||||||| |||||||||    
T  48861986 ttgttgaaaaaggtttctttattgttgttattgagaccgaaaatatcaaaccaatacaaataaatct 48861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 22786000 - 22785968
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccg 174  Q
    |||||||||||||||||||||||||||||||||    
T  22786000 gggtagctcaatgtttattatttggggtagccg 22785968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 6016935 - 6016966
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagcc 173  Q
    ||||||||||||||||||||||||||||||||    
T  6016935 gggtagctcaatgtttattatttggggtagcc 6016966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 54166187 - 54166238
Alignment:
Q  143 ggtagctcaatgtttattatttggggtagccggatataagtacataccgacc 194  Q
    ||||||||||||||||||||||||| |||| ||||| || ||| ||||||||    
T  54166187 ggtagctcaatgtttattatttgggatagctggataaaaatacttaccgacc 54166238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 172
Target Start/End: Complemental strand, 2407127 - 2407097
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagc 172  Q
    |||||||||||||||||||||||||||||||    
T  2407127 gggtagctcaatgtttattatttggggtagc 2407097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 17816064 - 17816133
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||||||||| |||  |||||||| ||||||||| |||| || |||| |||||||||||  ||||||||    
T  17816064 ttattgttgaataagttttctctatagttgttattaagattggaagtaccaaaccaatacatataaatct 17816133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 16608601 - 16608641
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagc 172  Q
    ||||| ||| |||||||||||| ||||||||||||||||||    
T  16608601 aacttttttggggtagctcaatatttattatttggggtagc 16608641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 292352 - 292606
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct---------gtggtaannnnnnnactttat 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||         |||||||       |||||||    
T  292352 ttattgttgaaaaaggcttctctatagttgttattgagatcgggagtatcaaaccaatacaaataaatctatcagtcttgtggtaatttttttactttat 292451  T
Q  108 tatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataa 207  Q
    |||||||||||||||||||||||||||||||||    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  292452 tatttatgtaaatttttgtgacggaacttatttgaaataactcaatgtttattatttgggatagccggatataagtacataccgaccacttcaagtataa 292551  T
Q  208 tannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    ||        | ||||||||| |||||| ||||||||||||||||||||||||||    
T  292552 tatttttcttggggtagccaaggctacctctcccatgtgaagggctacgcccctg 292606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 11142672 - 11142418
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct---------gtggt-aannnnnnnacttta 106  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||         ||||| ||       ||||||    
T  11142672 ttattgttgaaaaaggcttctctattgttgttatttagatcgggagtatcaaaccaatacaaataaatctatcagttttgtggttaatttttttacttta 11142573  T
Q  107 ttatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtata 206  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  11142572 ttatttatgtaaatttttgtgacggaacttatttggagtagctcaatgtttattatttgaggtagccgaatataagtacataccgaccactttaagtata 11142473  T
Q  207 atannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    |||        | ||||||||| |||||||||||||||||||||||||||||||||    
T  11142472 atatttttttgg-ggtagccaaggctacccctcccatgtgaagggctacgcccctg 11142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 10177897 - 10177646
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct---------gtggtaannnnnnnactttat 107  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||         || ||||       |||||||    
T  10177897 ttattgttgaaaaaagtttctctattgttgttattgagatcgggagtatcaaacaaatacaaataaatctatcaatcttgtagtaatttttt-actttat 10177799  T
Q  108 tatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataa 207  Q
    ||||||||| ||||||||  |||||| ||||||||||||||||||| |||||||||||| ||||| ||||| || ||||||||||||||||||||  |      
T  10177798 tatttatgttaatttttgcaacggaatttatttagggtagctcaatatttattatttggagtagctggataaaaatacataccgaccacttcaagatt-- 10177701  T
Q  208 tannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    |         | ||||||||| |||||||||||||| ||||||||||||||||||    
T  10177700 ttttttttttggggtagccaaggctacccctcccatatgaagggctacgcccctg 10177646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 19313381 - 19313128
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaata------aatct-gtggtaannnnnnnactttatta 109  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||  ||||| ||||      ||||| || ||||       |||||||||    
T  19313381 ttattgttgaaaaaagtttctctattgttgttattgagatcgggagtatcaaagaaatacaaatatccatcaatcttgtagtaatttttttactttatta 19313282  T
Q  110 tttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataata 209  Q
    ||||||| ||| ||||  ||||||  | ||| |||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||| |||||     
T  19313281 tttatgttaatatttgcaacggaatgtgtttggggtagctcaatatttattatttggggtagccggataaatatacataccgaccacttcaagaataatt 19313182  T
Q  210 nnnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctgt 263  Q
            | ||||||||| |||| || |||||| |||||||||||||||||||    
T  19313181 ttatttttggggtagccaaggctagccttcccatatgaagggctacgcccctgt 19313128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 23614539 - 23614378
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||||||||||||||  ||||||||  ||  |||||||||  |||||||||||||||||||||| |||||||||||||||| || |||||||  | ||||    
T  23614539 actttattatttatgctaatttttgcaactaaacttatttgaggtagctcaatgtttattatttagggtagccggatataaatatataccgattaattca 23614440  T
Q  201 agtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    || ||||||        | ||||||||| |||||||||||||| ||||||||||||||||||    
T  23614439 agaataatactttttttggggtagccaaggctacccctcccatatgaagggctacgcccctg 23614378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 10406272 - 10406526
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatc---------tgtggtaannnnnnnactttat 107  Q
    |||||||||||||| | |||||||  |||||||||||||||||||||||||||| ||||| ||||||||         ||| ||||       |||||||    
T  10406272 ttattgttgaaaaaagtttctcta--gttgttattgagatcgggagtatcaaacaaatacaaataaatctatcaatcttgtagtaatttttttactttat 10406369  T
Q  108 tatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataa 207  Q
    |||||||   |||||||   | |||| || |||  |||| |||||| |||||||||||| ||||||||||| || |||||||||||||||||||| |||     
T  10406370 tatttatactaatttttacaatggaatttgtttgaggtaactcaatatttattatttggagtagccggataaaaatacataccgaccacttcaagaatat 10406469  T
Q  208 tannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctgtgt 265  Q
    |         | ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  10406470 ttttttttttg-ggtagccaaggctacccctcccatatgaagggctatgcccctgtgt 10406526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 44960941 - 44960870
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccgg----atataagtacataccgaccacttcaagtataata 209  Q
    |||||||||||| |||||||||||||||||||||    |||||| |||||||||||||||||||| ||||||    
T  44960941 gggtagctcaatctttattatttggggtagccggccggatataaatacataccgaccacttcaagaataata 44960870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10620125 - 10620066
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||| |||| |||||||||||||||||  || ||||||||||||||||    
T  10620125 ttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatac 10620066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 15757738 - 15757679
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||| |||| |||||||||||||||||  || ||||||||||||||||    
T  15757738 ttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatac 15757679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 23614628 - 23614562
Alignment:
Q  20 ttgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||||||||||| |||| ||||||||||||||||| ||  | |||||||||||||| |||||||||    
T  23614628 ttgttgaaaaaggtttctttattgttgttattgagaccgaaaatatcaaaccaatacaaataaatct 23614562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 1600670 - 1600739
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||||||||||| || |||||||||||||||||||||| ||  || ||||||||||| | |||||||||    
T  1600670 ttattgttgaaaagggtttctctattgttgttattgagaccgaaagcatcaaaccaatgcaaataaatct 1600739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 5184913 - 5184984
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaag 202  Q
    |||||||||||||||| |||||| ||||||||||||||||||   |||||| || ||||| |||| ||||||    
T  5184913 gaacttatttagggtaactcaatatttattatttggggtagctaaatataaatagataccaaccagttcaag 5184984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 1600797 - 1600896
Alignment:
Q  159 ttatttggggtagccggatataagtacataccgaccacttcaagtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcc 258  Q
    |||||||||||||||  |||||| |||||||| ||||||||||| ||||||          ||||||||| || ||||||||||| ||||||||||||||    
T  1600797 ttatttggggtagccaaatataaatacataccaaccacttcaagaataatatttttttt-tggtagccaaggccacccctcccatatgaagggctacgcc 1600895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 29357209 - 29357169
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagc 172  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  29357209 aacttatttggggtagctcaatatttattatttggggtagc 29357169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 52111098 - 52111163
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaat 84  Q
    |||||||||||| ||  |||||||  ||||||||||||||||  |||||||||||||||| |||||||    
T  52111098 ttattgttgaaatagttttctcta--gttgttattgagatcgaaagtatcaaaccaatacaaataaat 52111163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 29799171 - 29799217
Alignment:
Q  135 ttatttagggtagctcaatgtttattatttggggtagccggatataa 181  Q
    |||||| | ||| ||||||||||||||||||||||||||| ||||||    
T  29799171 ttatttggagtaactcaatgtttattatttggggtagccgaatataa 29799217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 44961446 - 44961381
Alignment:
Q  21 tgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||||||| || |||||||||||||||||||||| ||  || |||||| |||| | |||||||||    
T  44961446 tgttgaaaagggtttctctattgttgttattgagaccgaaagcatcaaatcaatgcaaataaatct 44961381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 21972301 - 21972265
Alignment:
Q  135 ttatttagggtagctcaatgtttattatttggggtag 171  Q
    |||||| |||||||||||| |||||||||||||||||    
T  21972301 ttatttggggtagctcaatatttattatttggggtag 21972265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 47367726 - 47367678
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccggatataagtacatacc 190  Q
    |||||||||||||||||||||||| ||||||   |||||| ||||||||    
T  47367726 gggtagctcaatgtttattatttgaggtagcaaaatataaatacatacc 47367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 16152200 - 16152039
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||||||||||||||  ||||||||  ||  ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||  | ||||    
T  16152200 actttattatttatgctaatttttgcaactaaacttatttggggtagctcaatgtttattatttggggtagccggatataaatatataccgattaattca 16152101  T
Q  201 agtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    || ||||||        | ||||||||| |||||||||||||| ||||||||||||||||||    
T  16152100 agaataatactttttttggggtagccaaggctacccctcccatatgaagggctacgcccctg 16152039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 48523795 - 48523734
Alignment:
Q  263 tgtaggggttgaagttcgaactcaaattccctccacttattcaccttgaggggtaaatttcta 325  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48523795 tgtaggggttgaagttcgaactcaaattccc-ccacttattcaccttgaggggtaaatttcta 48523734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 11033981 - 11034101
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataatannnnnnnngaggtagccaaagctacccctccc 241  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||||||||| ||||  ||||||          | ||||||| ||||||||||||    
T  11033981 gggtagctcaatgtttattatttgaggtaaccggatataaatacataccgaccacatcaaaaataatattttttttcggatagccaaggctacccctccc 11034080  T
Q  242 atgtgaagggctacgcccctg 262  Q
    || ||||||||||||||||||    
T  11034081 atatgaagggctacgcccctg 11034101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 48523707 - 48523661
Alignment:
Q  349 ctcaaaatatctaatattttaacactactcaaattaaatcttaccaa 395  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  48523707 ctcaaaatatctaatattctaacactactcaaattaaatcttaccaa 48523661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 11027973 - 11028036
Alignment:
Q  23 ttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||| |||| |||||||||||||||||  || |||||||||||||||| |||||||||    
T  11027973 ttgaaaaaggtttctttattgttgttattgagactggaagtatcaaaccaatacaaataaatct 11028036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 52403485 - 52403544
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacatacc 190  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||||  ||||||||    
T  52403485 gaacttatttagggtatctcaatgtttattatttagggtagctggatatagatacatacc 52403544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 16152289 - 16152223
Alignment:
Q  20 ttgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||||||||||| |||| ||||||||||||||||| ||  | |||||||||||||| |||||||||    
T  16152289 ttgttgaaaaaggtttctttattgttgttattgagaccgaaaatatcaaaccaatacaaataaatct 16152223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 17653071 - 17653130
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||  | || |||||||||||||||||| || ||||||||||||||||    
T  17653071 ttattgttgaaaaagtttactttattgttgttattgagatgggaagtatcaaaccaatac 17653130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 21295994 - 21295935
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||| |||| ||||||||||| |||||  || ||||||||||||||||    
T  21295994 ttattgttgaaaaaggtttctttattgttgttactgagacgggaagtatcaaaccaatac 21295935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 46823866 - 46823807
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||| |||| |||||||||||||||||  |  ||||||||||||||||    
T  46823866 ttattgttgaaaaaggtttctttattgttgttattgagacggaaagtatcaaaccaatac 46823807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 20843312 - 20843344
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccg 174  Q
    |||||||||||||||||||||||||||||||||    
T  20843312 gggtagctcaatgtttattatttggggtagccg 20843344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 35061925 - 35061855
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaag 202  Q
    ||||||||||| |||||||||| ||||||||||| ||||||   |||||| || ||||| |||| ||||||    
T  35061925 aacttatttagagtagctcaatatttattatttgaggtagctaaatataaatatataccaaccaattcaag 35061855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 40763782 - 40763748
Alignment:
Q  145 tagctcaatgtttattatttggggtagccggatat 179  Q
    |||||||||||||||||||||||||||||| ||||    
T  40763782 tagctcaatgtttattatttggggtagccgaatat 40763748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 43115203 - 43115014
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatc---------tgtggtaannnnnnnactttat 107  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||         ||| ||||       |||||||    
T  43115203 ttattgttgaaaaaag-ttctctattgttgttattgagatcgggagtatcaaacaaatacaaataaatctatcaatcttgtagtaatttttttactttat 43115105  T
Q  108 tatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccactt 198  Q
    ||||||||  |||||||   |||||| || |||  ||||||||||| |||||||||||| ||| ||||||| || ||||||||||||||||    
T  43115104 tatttatgctaatttttacaacggaatttgtttgaggtagctcaatatttattatttggagtatccggataaaaatacataccgaccactt 43115014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 38699848 - 38699919
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatctgt 88  Q
    |||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  38699848 ttattgttgaaaaatgtttctctactgttgttattgagatcgagagtatcaaacaaatacaaataaatctgt 38699919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 41570297 - 41570169
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaagtataatannnnnnnngaggtagccaaag 230  Q
    |||||| ||| |||||||||||| |||||||||||||||||| | |||||| |||||||| ||||  ||||| | ||||        | ||||||||| |    
T  41570297 gaacttttttggggtagctcaatatttattatttggggtagctgaatataaatacatacctaccaactcaagaaaaatattgtttttggggtagccaagg 41570198  T
Q  231 ctacccctcccatgtgaagggctacgccc 259  Q
    |||||||| |||  |||||||||||||||    
T  41570197 ctaccccttccacatgaagggctacgccc 41570169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 13541518 - 13541585
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaat 84  Q
    |||||||||||||||  |||||||||||||||||| ||| ||  |||||||||||||||| |||||||    
T  13541518 ttattgttgaaaaagatttctctattgttgttattaagaccgaaagtatcaaaccaatacaaataaat 13541585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 13682955 - 13682888
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaat 84  Q
    |||||||||||||||  |||||||||||||||||| ||| ||  |||||||||||||||| |||||||    
T  13682955 ttattgttgaaaaagatttctctattgttgttattaagaccgaaagtatcaaaccaatacaaataaat 13682888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 21441677 - 21441736
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||| |||| |||||||||||||||||  || ||||||||||||||||    
T  21441677 ttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatac 21441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 13541645 - 13541695
Alignment:
Q  159 ttatttggggtagccggatataagtacataccgaccacttcaagtataata 209  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  13541645 ttatttggggtagccggatacaagtacataccgaccactttaagaataata 13541695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 13682828 - 13682778
Alignment:
Q  159 ttatttggggtagccggatataagtacataccgaccacttcaagtataata 209  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  13682828 ttatttggggtagccggatacaagtacataccgaccactttaagaataata 13682778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 41323265 - 41323324
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||| | |||| |||||||||||||||||  || ||||||||||||||||    
T  41323265 ttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatac 41323324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 43114989 - 43114947
Alignment:
Q  220 ggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  43114989 ggtagccaaggctacccctcccatatgaagggctacgcccctg 43114947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 4072311 - 4072370
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||  |||| |||||||||||||||||  |  ||||||||||||||||    
T  4072311 ttattgttgaaaaagttttctttattgttgttattgagacggaaagtatcaaaccaatac 4072370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 38700053 - 38700096
Alignment:
Q  218 gaggtagccaaagctacccctcccatgtgaagggctacgcccct 261  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||    
T  38700053 gaggtagccaaggctacccctcccatatgaatggctacgcccct 38700096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 5808870 - 5808907
Alignment:
Q  135 ttatttagggtagctcaatgtttattatttggggtagc 172  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  5808870 ttatttggggtagctcaatatttattatttggggtagc 5808907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 6115029 - 6115098
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||| ||||||   |||||||  |||||||||||||| | |||| ||||||||||| |||||||||    
T  6115029 ttattgttaaaaaagttctctctataattgttattgagatcagaagtaccaaaccaatacaaataaatct 6115098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 34033976 - 34033815
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||||||||||||||  ||||||||  ||  ||||| |||  ||||||  ||||||||||| ||||||||||| ||||| | ||||||||||| | ||||    
T  34033976 actttattatttatgctaatttttgcaactaaacttgtttgaggtagccaaatgtttattaattggggtagccagatatcaatacataccgactaattca 34033877  T
Q  201 agtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    || ||||||        | ||||||||| |||||||||||||| ||||||||||||||||||    
T  34033876 agaataatattttttttggggtagccaaggctacccctcccatatgaagggctacgcccctg 34033815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 41640152 - 41640221
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||||| |||| |||||||||||||||||  || |||||||||||||||| |||||||||    
T  41640152 ttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatacaaataaatct 41640221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 17769060 - 17769119
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||| |||| |||||||||||||||||  || ||||||||||||||||    
T  17769060 ttattgttgaaaaaggtttctttattgttgttattgagacgggaagtatcaaaccaatac 17769119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 22098990 - 22098928
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgacc 194  Q
    ||||| ||| |||||||||||| ||| |||||||||||||||| |||||| ||||||||||||    
T  22098990 aacttgtttggggtagctcaatattttttatttggggtagccgaatataaatacataccgacc 22098928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 13517560 - 13517501
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||| | |||| |||||||||||||||||  || ||||||||||||||||    
T  13517560 ttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatac 13517501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 16908871 - 16908924
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccggatataagtacataccgacca 195  Q
    |||||||||||| ||||||||||| ||||||||||||||| || ||||| ||||    
T  16908871 gggtagctcaatatttattatttgaggtagccggatataaatatataccaacca 16908924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 41640246 - 41640315
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggta 170  Q
    |||||||||||||||  || |||||  ||  ||||||||||||||| |||||||||||||||||| ||||    
T  41640246 actttattatttatgctaacttttgcaactaaacttatttagggtaactcaatgtttattatttgaggta 41640315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 17698708 - 17698808
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||||||||||||||  ||||||||  ||| || || ||| || ||||||||| ||||||||||| | || ||| ||| || |||||||| |||||||||    
T  17698708 actttattatttatgctaatttttgcaacgaaatttgtttgggatagctcaatatttattatttgagataaccgaataaaaatacataccaaccacttca 17698807  T
Q  201 a 201  Q
    |    
T  17698808 a 17698808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 34034048 - 34034000
Alignment:
Q  38 ctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||| ||| ||  |||||||||||||||| |||||||||    
T  34034048 ctattgttgttattaagaccgaaagtatcaaaccaatacaaataaatct 34034000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1709 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 1388 - 1224
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||| ||||||| ||| ||||||||  ||| || |||||| |||||| ||||| |||||||||||| ||||||||||| || |||||||||||||||| |    
T  1388 acttcattatttgtgttaatttttgcaacgaaatttatttggggtagttcaatatttattatttggagtagccggataaaaatacataccgaccacttaa 1289  T
Q  201 agtataa-tannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctgtg 264  Q
    || |||| ||          ||||||||| |||||||||||||| ||||||| ||||||||||||    
T  1288 agaataattatttttttttgggtagccaaggctacccctcccatatgaaggggtacgcccctgtg 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1709; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 1451 - 1412
Alignment:
Q  47 ttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  1451 ttattgagatcgggagtatcaaacaaatacaaataaatct 1412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 4435161 - 4435053
Alignment:
Q  101 actttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttca 200  Q
    |||||||||||||||  || |||||  |  ||||||||||||||||| ||||||||||||||||  |||| |||||||||| ||||||||||||| ||||    
T  4435161 actttattatttatgataacttttgcaattgaacttatttagggtagttcaatgtttattatttaaggtaaccggatataaatacataccgaccaattca 4435062  T
Q  201 agtataata 209  Q
    || ||||||    
T  4435061 agaataata 4435053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 4435264 - 4435185
Alignment:
Q  7 tagattattcttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    ||||| ||| |||||||| ||||||| ||||||||  |||||||||||| ||| |||||||||| ||||| |||||||||    
T  4435264 tagataatttttattgttaaaaaaggtttctctataattgttattgagaccggaagtatcaaacaaatacaaataaatct 4435185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 16546330 - 16546287
Alignment:
Q  138 tttagggtagctcaatgtttattatttggggtagccggatataa 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  16546330 tttagggtagctcaatgtttattatttggggtagccgaatataa 16546287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 45656071 - 45656103
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccg 174  Q
    |||||||||||| ||||||||||||||||||||    
T  45656071 gggtagctcaatatttattatttggggtagccg 45656103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 29716022 - 29716181
Alignment:
Q  103 tttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccactt-caa 201  Q
    |||||||| ||||  ||||||||  ||| || || ||| |||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||  ||    
T  29716022 tttattatgtatgctaatttttgcaacgaaatttgtttggggtagctcaatatttattatttggggtagccgaataaaaatacataccgaccacttaaaa 29716121  T
Q  202 gtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    | |||||         | ||||||| |||||||||||||||| |||||||||| |||||||    
T  29716122 gaataattttttttttggggtagcc-aagctacccctcccatatgaagggctatgcccctg 29716181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 29715929 - 29715998
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||| | || |||||||||||||||||||||  ||||||||||| ||||| |||||||||    
T  29715929 ttattgttgaaaaaagtttttctattgttgttattgagatcaagagtatcaaacaaatacaaataaatct 29715998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 45855447 - 45855377
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccacttcaag 202  Q
    ||||||||| |||||||||||| ||||||||||||||||||   |||||| || |||||||||| ||||||    
T  45855447 aacttatttggggtagctcaatatttattatttggggtagctaaatataaatatataccgaccaattcaag 45855377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 39719941 - 39719882
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||| | |||| |||||||||||||||||  || ||||||||||||||||    
T  39719941 ttattgttgaaaaatgtttctttattgttgttattgagacgggaagtatcaaaccaatac 39719882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 48609189 - 48609248
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||  |||| |||||||||||||||||  || ||||||||||||||||    
T  48609189 ttattgttgaaaaagttttctttattgttgttattgagacgggaagtatcaaaccaatac 48609248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 13465434 - 13465393
Alignment:
Q  138 tttagggtagctcaatgtttattatttggggtagccggatat 179  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  13465434 tttagggtagctcaatgttaattatttggggtagccgaatat 13465393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 34658977 - 34658913
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgacca 195  Q
    |||||| ||| | |||||||||||| |||||||| ||||||| | |||||| |||||||||||||    
T  34658977 gaacttgtttggagtagctcaatgtatattatttagggtagcggaatataaatacataccgacca 34658913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 25592013 - 25591954
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacatacc 190  Q
    |||||| ||| | |||||||||| |||||||||||||||||| |||||||  ||||||||    
T  25592013 gaacttgtttggagtagctcaatatttattatttggggtagctggatatagatacatacc 25591954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 25439686 - 25439723
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccggatat 179  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  25439686 gggtagctcaatatttattatttggggtagccgaatat 25439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 25592137 - 25592068
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||||   |||||||  |||||||||||| ||| |||| |||| |||||| |||||||||    
T  25592137 ttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaatcaatacaaataaatct 25592068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 28491284 - 28491255
Alignment:
Q  145 tagctcaatgtttattatttggggtagccg 174  Q
    ||||||||||||||||||||||||||||||    
T  28491284 tagctcaatgtttattatttggggtagccg 28491255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 83716 - 83768
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaa 69  Q
    |||||||||||||||| |||| ||| |||||||||||||  || |||||||||    
T  83716 ttattgttgaaaaaggtttctttatcgttgttattgagacgggaagtatcaaa 83768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 758891 - 758835
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaa 73  Q
    ||||| |||||||||| |||| ||| |||||||||||||  || |||||||||||||    
T  758891 ttattattgaaaaaggtttctttatcgttgttattgagacgggaagtatcaaaccaa 758835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 6428208 - 6428244
Alignment:
Q  293 ctccacttattcaccttgaggggtaaatttctagcca 329  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  6428208 ctccacttattcaccttaaggggtgaatttctagcca 6428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 46211761 - 46211817
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaa 73  Q
    |||||||||||||||| |||| ||| |||||||||||||  |  |||||||||||||    
T  46211761 ttattgttgaaaaaggtttctttatcgttgttattgagacggaaagtatcaaaccaa 46211817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 7119 - 7182
Alignment:
Q  131 gaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgacc 194  Q
    |||||| ||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  7119 gaacttgtttggggtaactcaatgtttattatttggggtagtcggatataaatacataccgacc 7182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 428539 - 428629
Alignment:
Q  101 actttattatttatgtaaatttttgtga-cggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacatacc 190  Q
    |||||||||||||| | ||||||||  | | ||| ||||||||||||||||||||||||||||||| |||||| |||||||| || |||||    
T  428539 actttattatttatattaatttttgacaactgaatttatttagggtagctcaatgtttattatttgaggtagctggatataattatatacc 428629  T

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Target: scaffold0481 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 6684 - 6615
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||| | ||||||| ||||||||||||||||| ||||||||||  ||||| |||||||||    
T  6684 ttattgttgaaaaaagtttctctagtgttgttattgagatcgagagtatcaaataaatacaaataaatct 6615  T

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Target: scaffold0481; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 6591 - 6496
Alignment:
Q  103 tttattatttatgtaaatttttgtgacggaacttatttagggtagctcaatgtttattatttggggtagccggatataagtacataccgaccactt 198  Q
    |||||||||||||  ||||||||  ||| || || ||| | |||||||||| ||||||||||| |||||||| ||| || ||||||||||||||||    
T  6591 tttattatttatgctaatttttgcaacgaaatttgtttggagtagctcaatatttattatttgaggtagccgaataaaaatacataccgaccactt 6496  T

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Target: scaffold0481; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 6473 - 6431
Alignment:
Q  220 ggtagccaaagctacccctcccatgtgaagggctacgcccctg 262  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  6473 ggtagccaaggctacccctcccatatgaagggctacgcccctg 6431  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 27674046 - 27673981
Alignment:
Q  19 attgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaat 84  Q
    |||||||||||||| ||||||||| |||||||||||| ||  |||||||||||||||| |||||||    
T  27674046 attgttgaaaaaggtttctctattattgttattgagaccgaaagtatcaaaccaatacaaataaat 27673981  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 22956659 - 22956717
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagccggatataagtacatacc 190  Q
    ||||| ||| |||||||||||| |||||||||||||||||| |||||||  ||||||||    
T  22956659 aacttgtttggggtagctcaatttttattatttggggtagctggatatagatacatacc 22956717  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 23831733 - 23831675
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagccggatataagtacatacc 190  Q
    ||||| ||| |||||||||||| |||||||||||||||||| |||||||  ||||||||    
T  23831733 aacttgtttggggtagctcaatttttattatttggggtagctggatatagatacatacc 23831675  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 22956535 - 22956604
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||||   |||||||  |||||||||||| ||| |||| ||||||||||| |||||||||    
T  22956535 ttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaataaatct 22956604  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 23831857 - 23831788
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||||   |||||||  |||||||||||| ||| |||| ||||||||||| |||||||||    
T  23831857 ttattgttgaaaaagttctctctataattgttattgagagcggaagtaccaaaccaatacaaataaatct 23831788  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 27673921 - 27673821
Alignment:
Q  159 ttatttggggtagccggatataagtacataccgaccacttcaagtataatannnnnnnngaggtagccaaagctacccctcccatgtgaagggctacgcc 258  Q
    |||||| ||||| | |||||||| |||| || || ||||||||| ||||||        | ||||||||| |||||||||||||| ||||||||||||||    
T  27673921 ttatttcgggtacctggatataaatacacacggaacacttcaagaataatattttttttggggtagccaaggctacccctcccatatgaagggctacgcc 27673822  T
Q  259 c 259  Q
    |    
T  27673821 c 27673821  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 33224627 - 33224587
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggtagc 172  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  33224627 aacttgtttagggtagctcaatatttattatttggggtagc 33224587  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 34729837 - 34729778
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatac 76  Q
    |||||||||||||||  |||  |||||||||||||||||  || ||||||||||||||||    
T  34729837 ttattgttgaaaaagttttcgttattgttgttattgagacgggaagtatcaaaccaatac 34729778  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 904250 - 904287
Alignment:
Q  135 ttatttagggtagctcaatgtttattatttggggtagc 172  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  904250 ttatttggggtagctcaatatttattatttggggtagc 904287  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 1780768 - 1780805
Alignment:
Q  142 gggtagctcaatgtttattatttggggtagccggatat 179  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  1780768 gggtagctcaatgtttattatatggggtagccgaatat 1780805  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 8560116 - 8560153
Alignment:
Q  132 aacttatttagggtagctcaatgtttattatttggggt 169  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  8560116 aacttatttggggtagctcaatatttattatttggggt 8560153  T

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Target: scaffold1554 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 790 - 722
Alignment:
Q  17 ttattgttgaaaaaggcttctctattgttgttattgagatcgggagtatcaaaccaatacgaataaatct 86  Q
    |||||||||||||||| |||||||||||||||||| ||| | | | |||||||||||||| |||||||||    
T  790 ttattgttgaaaaaggtttctctattgttgttatttaga-ccgaaatatcaaaccaatacaaataaatct 722  T

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