View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19127_low_16 (Length: 404)
Name: NF19127_low_16
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 12617241 - 12617616
Alignment:
| Q |
13 |
aatattttttaccatgcatgttgttaccatatgaccactaacattagatcattgccttttgtaacaattgtttcttctctacacccaatacacacaacca |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12617241 |
aatattttttactatgcatgttgttaccatatgaccactaacattagatcattgtcatttgtaacaattgtttcttctctacgcccaatacacacaacca |
12617340 |
T |
|
| Q |
113 |
atggcaatccaatgaagatcactcatactagtcatgtatccacctcaaacctcactcttcctgacatctattgcataccgaacttgacacttaatcttat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12617341 |
atggcaatccaatgaagatcactcatactagtcatgtatccacctcaaacctcactcttccttacatctattgcatacagaacttgacacttaatcttat |
12617440 |
T |
|
| Q |
213 |
ttatgttggccaattgtgtgaacaaggataaaatgtttatttttctccttcaggtgtccatatattgaatctacagacgaaacatatcattgggacatgt |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||||||||| |
|
|
| T |
12617441 |
ttctgttggccaattgtgtgaacaaggacaaaatgtttatttttctccttcaggtgtccatgtacttaatctacaaacgaaacatatcattgggacatgt |
12617540 |
T |
|
| Q |
313 |
cgcagggtgggtctattatttgagcttcaatctcttcatcttccaaagaaacatgcgtcaacagctactgtgatat |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
12617541 |
cgcagggtgggtctattatttgagcttcaatctcttcatcttccaaagaaacatgtgtcaacagctactatgatat |
12617616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 11350965 - 11351036
Alignment:
| Q |
285 |
acagacgaaacatatcattgggacatgtcgcagggtgggtctattatttgagcttcaatctcttcatcttcc |
356 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
11350965 |
acagacgaagcagatcattgggacgggtcgcagggtgggtcggttatttgagctccaatctctccaccttcc |
11351036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 356
Target Start/End: Original strand, 9665137 - 9665462
Alignment:
| Q |
31 |
tgttgttaccatatgaccactaacattagatcattgccttttgtaacaattgtttcttctctacacccaatacacacaaccaatggcaatccaatgaaga |
130 |
Q |
| |
|
|||||| | |||||||| ||| | |||| ||||||||||| || ||| ||||||||||| | | ||||| |||||| | | ||||||| ||||||| | |
|
|
| T |
9665137 |
tgttgtaatcatatgacgactgatattaaatcattgccttctgcgacacttgtttcttctttgccaccaatccacacagctagtggcaatacaatgaaca |
9665236 |
T |
|
| Q |
131 |
tcactcatactagtcatgtatccacctcaaacctcactcttcctgacatctattgcataccgaacttgacacttaatcttatttatgttggccaattgtg |
230 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| || ||||||| |||| ||| || |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
9665237 |
tcactcataccggtcatgtatccacctcaaatctcaccctgcctgacacatattacattcctaacttgacacttaatcttatttttgttggtcaattgtg |
9665336 |
T |
|
| Q |
231 |
tgaacaaggataaaatgtttatttttctccttcaggtgtccatatattgaatctacagacgaaacatatcattgggacatgtcgcagggtgggtctatta |
330 |
Q |
| |
|
|||||||||| |||||||||||||| | || ||||| || || | ||| ||||||||| || |||||||||| ||||||||||||||| ||| |
|
|
| T |
9665337 |
tgaacaaggactgaatgtttatttttcaacatctggtgttcaggtacaggatccacagacgaagcagatcattgggatgggtcgcagggtgggtcggtta |
9665436 |
T |
|
| Q |
331 |
tttgagcttcaatctcttcatcttcc |
356 |
Q |
| |
|
|||||||| |||||||| || ||||| |
|
|
| T |
9665437 |
tttgagctccaatctctccaccttcc |
9665462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University