View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_18 (Length: 369)
Name: NF19127_low_18
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 44884235 - 44883976
Alignment:
| Q |
11 |
cacagacttatcaatctataaaacaagctgaaatatctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattac |
110 |
Q |
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| T |
44884235 |
cacagacttatcaatctataaaacaagctgaaatatctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattac |
44884136 |
T |
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| Q |
111 |
tggtcagaatgattgcacgatcctgtttcgcaagcctgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884135 |
tggtcagaatgattgcacgatcctgtttcgcaagcctgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatata |
44884036 |
T |
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| Q |
211 |
aacaacctaaatttgaattgtcatttacaaaatacaaaaacttgaatcttcatatttatt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884035 |
aacaacctaaatttgaattgtcatttacaaaatacaaaaacttgaatcttcatatttatt |
44883976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 44866344 - 44866113
Alignment:
| Q |
28 |
ataaaacaagctgaaatatctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattactggtcagaatgattgca |
127 |
Q |
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| T |
44866344 |
ataaaacaagctaaaatatctaaagtataaactagaaacaaaatatagtgcgacaaaatccatgaaagagtgtgtgagattactggtcagaatgattgca |
44866245 |
T |
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| Q |
128 |
cgatcctgtttcgcaagcctgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaa |
227 |
Q |
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| T |
44866244 |
cgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatccatataaacaacctaaatttgaa |
44866145 |
T |
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| Q |
228 |
ttgtcatttacaaaatacaaaaacttgaatct |
259 |
Q |
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|||||||||||||||||| ||||| ||||||| |
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| T |
44866144 |
ttgtcatttacaaaatacgaaaacatgaatct |
44866113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 47 - 260
Target Start/End: Complemental strand, 44851999 - 44851787
Alignment:
| Q |
47 |
ctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattactggtcagaatgattgcacgatcctgtttcgcaagcc |
146 |
Q |
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|||||| ||||| |||||||||| | ||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
44851999 |
ctaaagcataaattagaagcaaa-tgtagtgctacaaaatccatgaaagagtgtgtggggttactggtcagaataattgcacgatcctgtttcgcaagct |
44851901 |
T |
|
| Q |
147 |
tgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaataca |
246 |
Q |
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||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |
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| T |
44851900 |
tgataacattccataggcatttccttgaagcagggtctaatccagtacttggctcatccatataaacaacctaaatttgaattggcatgtacagaataag |
44851801 |
T |
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| Q |
247 |
aaaacttgaatctt |
260 |
Q |
| |
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|||||||||||||| |
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| T |
44851800 |
aaaacttgaatctt |
44851787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 46 - 260
Target Start/End: Complemental strand, 44900913 - 44900701
Alignment:
| Q |
46 |
tctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattactggtcagaatgattgcacgatcctgtttcgcaagc |
145 |
Q |
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||||||| |||||| |||| || ||| |||||||| ||||||||||||||| |||| | | ||||||| |||||||||||||||||||||||||||||| |
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| T |
44900913 |
tctaaagcataaacaagaaacagaatatagtgctataaaatccatgaaagaatgagag--aatactggttagaatgattgcacgatcctgtttcgcaagc |
44900816 |
T |
|
| Q |
146 |
ctgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatac |
245 |
Q |
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|||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |||| |
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| T |
44900815 |
ctgataacattccataggcatttccttgaagcagggtctaatcccgtgcttggctcatccatataaacaacctaaatttgaattggcatgtacagaataa |
44900716 |
T |
|
| Q |
246 |
aaaaacttgaatctt |
260 |
Q |
| |
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|||||||||||||| |
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| T |
44900715 |
gaaaacttgaatctt |
44900701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 44840520 - 44840312
Alignment:
| Q |
43 |
atatctaaagtataaactagaagcaaaatttagtgctacaaaatccatgaaagagtgagtgtgattactggtcagaatgattgcacgatcctgtttcgca |
142 |
Q |
| |
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|||||||||| |||||| | |||| ||| ||||||||||| |||||||||||| |||| | |||| |||| |||||||||||| ||| |||||||| |
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| T |
44840520 |
atatctaaagcataaacaaaaagctgaatatagtgctacaagatccatgaaagattgagaa--aatactagtcaaaatgattgcacggtccagtttcgca |
44840423 |
T |
|
| Q |
143 |
agcctgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaa |
242 |
Q |
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| | ||||| ||||||| || || ||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
44840422 |
atcttgataacattccaaagccatttccttgaagcagggtctaatccagtacttggctcatccaaataaacaatctaaatttgaattggcatttacaaaa |
44840323 |
T |
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| Q |
243 |
tacaaaaactt |
253 |
Q |
| |
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|| ||||||| |
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| T |
44840322 |
taagaaaactt |
44840312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 12924683 - 12924725
Alignment:
| Q |
176 |
gcagggtctaatccggtacttggctcatccatataaacaacct |
218 |
Q |
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| T |
12924683 |
gcagggtctaatccagtacttggttcatccatataaacaacct |
12924725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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