View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_24 (Length: 318)
Name: NF19127_low_24
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 31722051 - 31721763
Alignment:
| Q |
18 |
ggaagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaatt |
117 |
Q |
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| T |
31722051 |
ggaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaatt |
31721952 |
T |
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| Q |
118 |
gttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgg |
217 |
Q |
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| T |
31721951 |
gttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgg |
31721852 |
T |
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| Q |
218 |
attccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
306 |
Q |
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| T |
31721851 |
attccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
31721763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 31711345 - 31711057
Alignment:
| Q |
18 |
ggaagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaatt |
117 |
Q |
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||||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711345 |
ggaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaatt |
31711246 |
T |
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| Q |
118 |
gttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgg |
217 |
Q |
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| T |
31711245 |
gttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacgg |
31711146 |
T |
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| Q |
218 |
attccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711145 |
attccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
31711057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 31719444 - 31719164
Alignment:
| Q |
20 |
aagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgt |
119 |
Q |
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|||||||||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719444 |
aagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcaccattgaaattgt |
31719345 |
T |
|
| Q |
120 |
tgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggat |
219 |
Q |
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| T |
31719344 |
tgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggat |
31719245 |
T |
|
| Q |
220 |
tccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
306 |
Q |
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| T |
31719244 |
tccaaaggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacctt |
31719164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 31716500 - 31716237
Alignment:
| Q |
18 |
ggaagaagatgcagatcatacggatgagaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
31716500 |
ggaagaagatgcagatcatacggatgagaagtccacgtagggattggaagatcagaacaagtccaaagctaagatggatgataagat------------- |
31716414 |
T |
|
| Q |
118 |
gttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacgg |
217 |
Q |
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| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| || |
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| T |
31716413 |
ggtgacaaaaatcaagaatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggtgtgaaaagg |
31716314 |
T |
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| Q |
218 |
attccaaaggctcgtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaa |
300 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
31716313 |
attccaaaggctcgtcaagt------atctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaa |
31716237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 31730169 - 31730222
Alignment:
| Q |
253 |
ttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
306 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||| |
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| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggcctt |
31730222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
| Q |
44 |
agaagtccacgtaaggattggaagataagaacaagcccaaagctaagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacgtata |
143 |
Q |
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||||| ||||||||| ||||| ||| | ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | ||||| |||| |
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| T |
31725929 |
agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata |
31726028 |
T |
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| Q |
144 |
tgaactttatgtt |
156 |
Q |
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||||||||||||| |
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| T |
31726029 |
tgaactttatgtt |
31726041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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