View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_25 (Length: 314)
Name: NF19127_low_25
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 6241345 - 6241606
Alignment:
| Q |
11 |
cacagaacaaaatttcataaagttatgcaagatagaacatgaactagacaccattgcattaaattcagaaagtaaagctctccnnnnnnnnaacatttta |
110 |
Q |
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| T |
6241345 |
cacaaaacaaaatttcataaagttatgcaagatagaacatgaactagacaccattgcattaaattcagaaagtaaagctctcctttttttaaaaatttta |
6241444 |
T |
|
| Q |
111 |
ttagcaaaaaaggaaatccatgcttcaaagttcaaactgataagatgtatttataaacaatataatttgtaaagtaaaaacaagtggaaatcaagtatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6241445 |
ttagcaaaaaaggaaatccatgcttcaaagttcaaactgataagatgtgtttataaacaatataatttgtaaagtaaaaacaaatggaaatcaagtatat |
6241544 |
T |
|
| Q |
211 |
cgaacaaactttttcctcgaaatcacatgaaagcatttcatcaacctcatccataacgacca |
272 |
Q |
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| T |
6241545 |
cgaacaaaccttttcctcgaaatcacatgaaagcatttcatcaacctcatccataacgacca |
6241606 |
T |
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Back To:
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 295
Target Start/End: Complemental strand, 17545049 - 17544873
Alignment:
| Q |
115 |
caaaaaaggaaatccatgcttc-aaagttcaaactgataagatgtatttataaacaatataatttgtaaagtaaaaacaagtggaaatcaagtatatcga |
213 |
Q |
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||||||||||||| ||||||| ||||||||||||| |||||||| | |||||||||| |||| ||||| |||||| | ||||||||||| || || |
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| T |
17545049 |
caaaaaaggaaattcatgctttgaaagttcaaactgttaagatgtgtatataaacaatggaattagtaaa-taaaaaaa--tggaaatcaagcatgtc-- |
17544955 |
T |
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| Q |
214 |
acaaactttttcctcgaaatcacatgaaagcatttcatcaacctcatccataacgaccatctttatgcaacctaggcgagta |
295 |
Q |
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|||||| || |||| |||| || ||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||| |
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| T |
17544954 |
acaaaccttatccttgaaaccaagtgaaagcatttgatcaacctcatccataacaaacatctttatgcaatctaggcgagta |
17544873 |
T |
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