View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_26 (Length: 307)
Name: NF19127_low_26
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 36327697 - 36327402
Alignment:
| Q |
1 |
ctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgcca |
100 |
Q |
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| T |
36327697 |
ctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgcca |
36327598 |
T |
|
| Q |
101 |
tcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtcattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36327597 |
tcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgagtctcttgacattagtgattgtcattat |
36327498 |
T |
|
| Q |
201 |
ttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaagtcgttatatccatgaagacaacgattctgatgatgat |
296 |
Q |
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| T |
36327497 |
ttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaagtcgttatatccatgaagacaacgattctgatgatgat |
36327402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 36336226 - 36335970
Alignment:
| Q |
1 |
ctcttttgaaatcccttaaatattgttcatggtcgcatgaatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgcca |
100 |
Q |
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|||||||||||| ||| | ||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
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| T |
36336226 |
ctcttttgaaatggcttcagtataattcatgctcgcttgactcttgtgactctgataaaatggcgtttcttattgctgaaacaatgcctggtctatgcca |
36336127 |
T |
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| Q |
101 |
tcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtcattat |
200 |
Q |
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||||||| ||| ||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||| ||||| | || |
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| T |
36336126 |
tcttgatatgagaggacacaagctcactgaacttggcgtgctcgccattattgataaatgccctcttcttgaatatcttgacattagtttttgtcttaat |
36336027 |
T |
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| Q |
201 |
ttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca |
257 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36336026 |
ttgaatgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca |
36335970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 41 - 281
Target Start/End: Complemental strand, 36313415 - 36313175
Alignment:
| Q |
41 |
atcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtg |
140 |
Q |
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| T |
36313415 |
atcttgtgactctgataaaacggcacttgttattgctgaaacaatgcctggtctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtg |
36313316 |
T |
|
| Q |
141 |
cttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtcattatttgactgaagatttgaagaaaaggtgcattgaccagatca |
240 |
Q |
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|| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||| |||| ||||||| |||||||| ||||| | |
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| T |
36313315 |
ctcgccattattgataaatgccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaaggtttggagaaaagctgcattgatcagatta |
36313216 |
T |
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| Q |
241 |
aggatttgcaactgccaagtcgttatatccatgaagacaac |
281 |
Q |
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| T |
36313215 |
atgatttgcacatgccagttcgttataaccatgaaaacaac |
36313175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 57 - 267
Target Start/End: Complemental strand, 36320797 - 36320587
Alignment:
| Q |
57 |
aaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgata |
156 |
Q |
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||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||||||| |||||||||||||| |
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| T |
36320797 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
36320698 |
T |
|
| Q |
157 |
gctgccctcttcttgactctcttgacattagtgattgtcattatttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcc |
256 |
Q |
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|| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
36320697 |
aatgtcctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttgacgaaaaggtgcattgaccagatcaaggatttgcaactgtc |
36320598 |
T |
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| Q |
257 |
aagtcgttata |
267 |
Q |
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| T |
36320597 |
atatcgttata |
36320587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 36333483 - 36333281
Alignment:
| Q |
40 |
aatcttgtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgt |
139 |
Q |
| |
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||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
36333483 |
aatcttgcgactctgataaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgt |
36333384 |
T |
|
| Q |
140 |
gcttgccattattgatagctgccctcttcttgactctcttgacattagtgattgtcattatttgactgaagatttgaag-aaaaggtgcattgaccagat |
238 |
Q |
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||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||| || || |
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| T |
36333383 |
gctcgccattattgataaaggccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaagatttggagaaaaaggtgcattgatcaaat |
36333284 |
T |
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| Q |
239 |
caa |
241 |
Q |
| |
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||| |
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| T |
36333283 |
caa |
36333281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 46 - 254
Target Start/End: Complemental strand, 36325788 - 36325574
Alignment:
| Q |
46 |
gtgactctgataaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgc |
145 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||| || |
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| T |
36325788 |
gtgaatctgataaaatggcttttgttattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcagtgaacttcgtgtgctcgc |
36325689 |
T |
|
| Q |
146 |
cattattgatagctgccctcttcttgactctcttgacattagtgattg----tcattatttga--ctgaagatttgaagaaaaggtgcattgaccagatc |
239 |
Q |
| |
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||| ||||||| |||||||||||||| |||||||||||||||| ||| ||||| | ||| |||||||||| | ||||| ||||| ||| ||||| |
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| T |
36325688 |
cataattgataaatgccctcttcttgaatctcttgacattagtgtttgtctttcattgtatgaagatgaagatttgcataaaagttgcatcgacaagatc |
36325589 |
T |
|
| Q |
240 |
aaggatttgcaactg |
254 |
Q |
| |
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|| |||||||||||| |
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| T |
36325588 |
aatgatttgcaactg |
36325574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 36309120 - 36309075
Alignment:
| Q |
212 |
tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca |
257 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
36309120 |
tttgaagaaaaggtgcattgatcagatcaatgatttgcaactgcca |
36309075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 42563630 - 42563560
Alignment:
| Q |
60 |
atggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactga |
130 |
Q |
| |
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|||||||||||||| ||||||| |||| ||||||| ||||||||||| | || |||||| |||| ||||| |
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| T |
42563630 |
atggcgtttgttatcgctgaaatgatgtctggtctgtgccatcttgatatcaatggacacaagcttactga |
42563560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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