View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_3 (Length: 657)
Name: NF19127_low_3
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 12 - 637
Target Start/End: Complemental strand, 414775 - 414150
Alignment:
| Q |
12 |
atcatcatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatgagtcgggaaacaacatagtc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414775 |
atcaccatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatgagtcgggaaacaacatagtc |
414676 |
T |
|
| Q |
112 |
ttaaaatcataacagttctaaatgcactgagaaagagaaatcataaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagca |
211 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
414675 |
ttaaaatcataacagttctaagtgcactgagaaagagaaatcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagca |
414576 |
T |
|
| Q |
212 |
aatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414575 |
aatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaa |
414476 |
T |
|
| Q |
312 |
tctttctttgcaatcagcttccttatcagttgcttctttcaattcaagaaatattactttaaccttctctgtcagttcctccttccttgcttcccatttg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414475 |
tctttctttgcaatcagcttccttatcagttgcttctttcaattcatgaaatatttctttaaccttctctgtcagttcctccttccttgcttcccatttg |
414376 |
T |
|
| Q |
412 |
ttcaaatctctttcagcagcttcagtcaccaacctaacgctgtctgtatcctgtatcagcttgcaagtctgcttaagaattcgccttgcctcaagtatct |
511 |
Q |
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| T |
414375 |
ttcaaatctctttcagcagcttcagtcaccatcctaacgctgtctgtttcctgtatcagcttgcaagtctgcttaagaattcgccttgcctcaagtatct |
414276 |
T |
|
| Q |
512 |
cagttagcctgctgtgaagccattcaacatccacgttctggttttttatataactcacgacgtcaatcttcttttccaggtttttgcttgagatgttagc |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414275 |
cagttagcctgctgtgaagccattcaacatccacgttctggttttttatataactcacgacgtcaatcttcttttccaggtttttgcttgagatgttagc |
414176 |
T |
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| Q |
612 |
aatactagcattctttttgtccaact |
637 |
Q |
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|||||||||||||||||||||||||| |
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| T |
414175 |
aatactagcattctttttgtccaact |
414150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 533
Target Start/End: Original strand, 7527576 - 7527612
Alignment:
| Q |
497 |
ttgcctcaagtatctcagttagcctgctgtgaagcca |
533 |
Q |
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| T |
7527576 |
ttgcctcaagtatgtcagttagcctactgtgaagcca |
7527612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 183 - 339
Target Start/End: Original strand, 37211616 - 37211772
Alignment:
| Q |
183 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
282 |
Q |
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|||||| |||||| ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||| ||||||| ||| |||||||| | |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
283 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
339 |
Q |
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||||||||||||| ||| |||| |||||| ||||| |||||||| || |||||| |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatca |
37211772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 339
Target Start/End: Original strand, 37217299 - 37217454
Alignment:
| Q |
184 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
283 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| || ||| |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
|
| Q |
284 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
339 |
Q |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatca |
37217454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 37211916 - 37211993
Alignment:
| Q |
483 |
cttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttctggttttttat |
560 |
Q |
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| T |
37211916 |
cttaagaatctgccttgcctcaagtatctcagttagcctggtgtgaagccactcaacttccactttcagattttttat |
37211993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 37217573 - 37217627
Alignment:
| Q |
479 |
tctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagcca |
533 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||| | |||||||| |
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| T |
37217573 |
tctgcttaagaatctgccttgcctcaagtattccagttagcctggtttgaagcca |
37217627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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