View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_35 (Length: 263)
Name: NF19127_low_35
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_35 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 10530387 - 10530622
Alignment:
| Q |
12 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaacaagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
111 |
Q |
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| T |
10530387 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
10530486 |
T |
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| Q |
112 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggttctctcgttaactcttgctcaaaggtctacatgcttgtcgtagctttgattg |
211 |
Q |
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| T |
10530487 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggttctctcgttaactcttgctcaaaggtctacatgcttgtcgtagctttgattg |
10530586 |
T |
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| Q |
212 |
aatttaaaatggcaaggttgagatagaataatgaaa |
247 |
Q |
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| T |
10530587 |
aatttaaaatggcaaggttgagatagaataatgaaa |
10530622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 2769 - 3002
Alignment:
| Q |
12 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaacaagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2769 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
2868 |
T |
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| Q |
112 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggttctctcgttaactcttgctcaaaggtctacatgcttgtcgtagctttgattg |
211 |
Q |
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| T |
2869 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggt--tctcgttaactcttgctcaaaggtctacatgcttgtcgtggctttgattg |
2966 |
T |
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| Q |
212 |
aatttaaaatggcaaggttgagatagaataatgaaa |
247 |
Q |
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| T |
2967 |
aatttaaaatggcaaggttgagatagaataatgaaa |
3002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 9818424 - 9818545
Alignment:
| Q |
12 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaacaagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
111 |
Q |
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| T |
9818424 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
9818523 |
T |
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| Q |
112 |
tagagttatctgtttatggttt |
133 |
Q |
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| T |
9818524 |
tagagttatctgtttatggttt |
9818545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 9818544 - 9818617
Alignment:
| Q |
174 |
ttgctcaaaggtctacatgcttgtcgtagctttgattgaatttaaaatggcaaggttgagatagaataatgaaa |
247 |
Q |
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| T |
9818544 |
ttgctcaaaggtctacatgcttgtcgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaa |
9818617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 16108408 - 16108445
Alignment:
| Q |
210 |
tgaatttaaaatggcaaggttgagatagaataatgaaa |
247 |
Q |
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| T |
16108408 |
tgaatttaaaatggcaaggttgaaatagaagaatgaaa |
16108445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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