View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_36 (Length: 252)
Name: NF19127_low_36
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_36 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 28924429 - 28924189
Alignment:
| Q |
11 |
agaaaatatcttaaaaggaaatggtaaatgaagtttatttaataacatggtaataaaagtaatacttctacagaagcttctttgtagtacatatacatca |
110 |
Q |
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| T |
28924429 |
agaaaatatcttaaaaggaaatggtaaatgaagtttatttaataacatagtaataaaagtaatacttctacagaagcttctttgcagtacatatacatca |
28924330 |
T |
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| Q |
111 |
ggtatccatatatcaagattgagatttaagctagagcatattaagctagtctaccattataccaatttcttcaaaatctagccttaaaattaatgctgtt |
210 |
Q |
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| T |
28924329 |
ggtatccatatatcaagattgagatttaagctggagcatattaagctagtctaccattataccaatttcttcaaaatctagcctt-aaattaatgctgtt |
28924231 |
T |
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| Q |
211 |
cacttgtttcaactattcttttgcctgaaatataaatgtaac |
252 |
Q |
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| T |
28924230 |
cacttgtttcaactattcttttgcctgaaatataaatgtaac |
28924189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 28915216 - 28914963
Alignment:
| Q |
12 |
gaaaatatcttaaaaggaaatggtaaatgaagtttatttaataacatggtaataaaagtaatacttctacagaagcttctttgtagtacatatac---at |
108 |
Q |
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| T |
28915216 |
gaaaatatctcaaaaagtaagggtgaatgaatttcatttaataatatagtaataaaagtaatacatctacagaagcttctttgccgtacatatacatcat |
28915117 |
T |
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| Q |
109 |
caggtatccatatatcaagattgagatttaagctagagcatattaa---------------gctagtctaccattataccaatttcttcaaaatctagcc |
193 |
Q |
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| T |
28915116 |
caggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaagca |
28915017 |
T |
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| Q |
194 |
ttaaaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatg |
248 |
Q |
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| T |
28915016 |
tt-aaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatg |
28914963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 28900773 - 28900529
Alignment:
| Q |
12 |
gaaaatatcttaaaaggaaatggtaaatgaagtttatttaataacatggtaataaaagtaatacttctacagaagcttctttgtagtacatatacatcag |
111 |
Q |
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| T |
28900773 |
gaaaatatctgaaaaagtaagggtgaatgaagtttatttattaatatagtaataaaagtaatacatctaca-----ttctttgcagtacatacacatcag |
28900679 |
T |
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| Q |
112 |
gtatccatatatcaagattgagatttaagctagagcatatta--------agct-------agtctaccattataccaatttcttcaaaatctagcctta |
196 |
Q |
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| T |
28900678 |
gtatccatagatcaagcttgagacataagctagagtatattaatatttgcagctatctacgagtcttctattataccaatttcttcaaaatctagcctt- |
28900580 |
T |
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| Q |
197 |
aaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatg |
248 |
Q |
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| T |
28900579 |
taatttatcctagtcacttgtttcaactattcttttgcc-gaaatataaatg |
28900529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 28933326 - 28933185
Alignment:
| Q |
13 |
aaaatatcttaaaaggaaatggtaaatgaagtttatttaataacatggtaataaaagtaa--------tacttctacagaagcttctttgtagtacatat |
104 |
Q |
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| T |
28933326 |
aaaatatcttaaaaagaaatggtaaatgaagttcatttaataacatagttataaaagtaataaagtattacatctaaggaagatcctttgcattacatat |
28933227 |
T |
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| Q |
105 |
acatcaggtatccatatatcaagattgagatttaagctagag |
146 |
Q |
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| T |
28933226 |
acatcaggtatccatagatcaagtttgagacttaagctagag |
28933185 |
T |
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