View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19127_low_37 (Length: 251)
Name: NF19127_low_37
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28924158 - 28923923
Alignment:
| Q |
1 |
atctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaagtctatttcttccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28924158 |
atctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaagtctatttcttccat |
28924059 |
T |
|
| Q |
101 |
tgtagaaatcatagaaagctatatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtgtaatgtcatattat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28924058 |
tgtagaaatcatagaaagctatatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtgtaatgtcatatgat |
28923959 |
T |
|
| Q |
201 |
tgaagctaatattatacatgtcaatggcatagaagg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
28923958 |
tgaagctaatattatacatgtcaatggcatagaagg |
28923923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 28914928 - 28914717
Alignment:
| Q |
1 |
atctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaagtctatttcttccat |
100 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||| |||||| |
|
|
| T |
28914928 |
atctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaacacatgttttgactcttcgacattgatgtcaacgtctatttattccat |
28914829 |
T |
|
| Q |
101 |
tgtagaaatcatagaaagctatatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtgtaatgtcatattat |
200 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||| ||||| ||||| ||||||| || | || |
|
|
| T |
28914828 |
tgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcacgcctaatgtaacatttcttaataagtaatgttatgtgat |
28914729 |
T |
|
| Q |
201 |
tgaagctaatat |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28914728 |
tgaagctaatat |
28914717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 28900487 - 28900267
Alignment:
| Q |
8 |
attcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaagtcta-tttcttccattgtaga |
106 |
Q |
| |
|
|||||||| |||||||| ||||||| |||| ||||||||||||| | ||| ||||||||||| ||| ||||| || ||||| ||||||| |||||||| |
|
|
| T |
28900487 |
attcattactttgtttggtaattaacatgttaaggtagtagccaatacat-ttttgactcttcaacaatgaagcaaatgtctaatttcttcaattgtaga |
28900389 |
T |
|
| Q |
107 |
aatcatagaaagctatatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtgtaatgtcatattattgaagc |
206 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||| |||||||| |||||| | ||||| || |||| | |||||||||||||||||| | | |||| |
|
|
| T |
28900388 |
aatcatagaaagctatatctccaaatggttattaaggcttgtcttttaacttcatgtccaatatatcattcactaatgtgtaatgtcatatgactaaagc |
28900289 |
T |
|
| Q |
207 |
taatattatacatgtcaatggcataga |
233 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
28900288 |
taatat-----atgtcaatggcataga |
28900267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 28933007 - 28932823
Alignment:
| Q |
29 |
ttaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaa-gtcta-------tttcttccattgtagaaatcatagaaagct |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| | |||||||||| ||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
28933007 |
ttaaaatgtaaaggtagtagccaatacatgttttgactcttctgcgttgaagtcaactgtcaaagcccaatttcttccattgtagtaatcatagaaagct |
28932908 |
T |
|
| Q |
121 |
atatgtccacatggttattagggcatgtcttttcacttcacgcccaatgtagcatttattaatgtgtaatgtcatattattgaag |
205 |
Q |
| |
|
|||| | |||||||||||| || ||||||||||| |||| ||||| || |||| |||||| || ||| |||| | ||||||| |
|
|
| T |
28932907 |
atatctatgcatggttattagagcctgtcttttcacctcacatccaatataacattcattaatatgcaatatcatgtgattgaag |
28932823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University