View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19127_low_4 (Length: 646)

Name: NF19127_low_4
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19127_low_4
NF19127_low_4
[»] chr1 (1 HSPs)
chr1 (11-632)||(32490099-32490722)


Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 632
Target Start/End: Original strand, 32490099 - 32490722
Alignment:
Q  11 cagagaggtgcaatggaagagctttgattacaatttttcctaacattatgatattatttctctgatatttttcctctcattgaagcttggattggctgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32490099 cagagaggtgcaatggaagagctttgattacaatttttcctaagattatgatattatttctctcatatttttcctctcattgaagcttggattggctgtc 32490198  T
Q  111 ataatataggtcaaccaaatgatttcacatggtgtagtagattatagatatgctcaatgtagactactttacttcatgtgatgggagacttttcgtccta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  32490199 ataatataggtcaaccaaatgatttcacatggtgtagtagattatagatatgctcaatgtagactactttaattcatgtgatggtagac-tttcgtccta 32490297  T
Q  211 cgtttcttcaacataatcacgttcatcttgtttcttgtaccttagtttcatacttcaaacataaaataatttctttataacatgcaccaaatatttgaca 310  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32490298 cgtttcttcaacataatcaagttcatcttgtttcttgtaccttagtttcatacttcaaacataaaataatttctttataacatgcaccaaatatttgaaa 32490397  T
Q  311 ttttgacaaataaaaaagctactccaaaaattcgtaatatactatataatatttgaaaattattcaacnnnnnnnnttatatcttaatttttcagtaaag 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||    
T  32490398 ttttgacaaataaaaaacctactccaaaaattcgtaatatactatataatatttgaaaattatccaacaaaaaaaattatatcttaatttttcagtaaag 32490497  T
Q  411 gtttttcgcttgtaaacctcttatttgttttctcaaatgataaacggcataaatttttagtttattatttaaaactga--nnnnnnnnatctagttttat 508  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  32490498 atttttcacttgtaaacctcttatttgttttctcaaatgataaacggcataaatttttagtttattatttaaaactgattttttttttatctagttttat 32490597  T
Q  509 gcaaatatctaattatattcattatatcttgtcnnnnnnngtctacatttttcaaatattct-nnnnnnntattaatattacaacatcacgccacaaatc 607  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||        || |||||||||||||||||||||||||||    
T  32490598 gcaaatatctaattatattcattatatcttgtcaaaaaaagtctacatttttcaaatattctaaaaaaaatactaatattacaacatcacgccacaaatc 32490697  T
Q  608 taataactagccgcctaaagataat 632  Q
    ||||||||||||||| |||||||||    
T  32490698 taataactagccgcccaaagataat 32490722  T

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