View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_43 (Length: 238)
Name: NF19127_low_43
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 24136838 - 24136623
Alignment:
| Q |
13 |
tactaaagagttgtaaaaatatcactgctcaaaacataactgtcttggtcctgttcatgctggtgtccatgcattttagatcgttaatcaagaaatagtg |
112 |
Q |
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| T |
24136838 |
tactaaaaagttgtataaatatcactactcaaaacataactgtcttggtcctgttcatactggtgtccatgcattttagatcgttaatcaagaaatagtg |
24136739 |
T |
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| Q |
113 |
gttagaggtggttgaatggaccc------------catgtatgaaaatttctcctccaatgttctaaaaggattattcttgcatgtcacaggaccaacta |
200 |
Q |
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| T |
24136738 |
gttagaggtggttgaatggaccccaaagatacatacatgtatgaaaatttctcctccaatgttctaaaaggattattcttgcatgtcataggaccaacta |
24136639 |
T |
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| Q |
201 |
caaattttttaggcat |
216 |
Q |
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| T |
24136638 |
caaattttttaggcat |
24136623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 24132408 - 24132326
Alignment:
| Q |
44 |
aaacataactgtcttggtcctgttcatgctggtgtccatgcattttagatcgttaatcaagaaatagtggttagaggtggttgaatggaccc |
135 |
Q |
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||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
24132408 |
aaacataactgtcttggtcctgtgcttgctgg---------attttggatcgttaatcaagaaatggtggttagaggtagttggatggaccc |
24132326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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