View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19127_low_45 (Length: 228)
Name: NF19127_low_45
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 36327685 - 36327894
Alignment:
| Q |
1 |
gatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327685 |
gatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctca |
36327784 |
T |
|
| Q |
101 |
tggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327785 |
tggcttcagtaaatccttcatctgtaatcttcgagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtatt |
36327884 |
T |
|
| Q |
201 |
aaaatttgct |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
36327885 |
aaaatttgct |
36327894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36313443 - 36313646
Alignment:
| Q |
1 |
gatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctca |
100 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||| |||||| ||||| ||||||| | ||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
36313443 |
gatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagctttctca |
36313542 |
T |
|
| Q |
101 |
tggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtatt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||||| |||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
36313543 |
cagcttcactaaatccttcatctgtaatcctcgagcaatctacaagccccatgcgacataggtgtctgccactgtaaaatttgaattaaaaagaactatt |
36313642 |
T |
|
| Q |
201 |
aaaa |
204 |
Q |
| |
|
|||| |
|
|
| T |
36313643 |
aaaa |
36313646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36325821 - 36326023
Alignment:
| Q |
1 |
gatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctca |
100 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||| |||||| || || ||||| | ||||||||||||||| |||||| || | ||||||||||||| |
|
|
| T |
36325821 |
gatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagcggaagctttctca |
36325920 |
T |
|
| Q |
101 |
tggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtatt |
200 |
Q |
| |
|
||||||| ||||||||| || ||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
36325921 |
aggcttcactaaatcctttatttgtcatcccccaacaatttacaagccgcatgcaaagtaggtgactgccactgtaaaatttat-ttaaaaagaactatt |
36326019 |
T |
|
| Q |
201 |
aaaa |
204 |
Q |
| |
|
|||| |
|
|
| T |
36326020 |
aaaa |
36326023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 36333517 - 36333715
Alignment:
| Q |
2 |
atttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcat |
101 |
Q |
| |
|
||||||||||| ||||| | ||||| || ||| |||||| |||||||||| ||||| ||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
36333517 |
atttcaaaagatggcaagatcgaccaagaacttcaagaga--catcggttagacagcaatatgaaatgtccactttctccaactgtggaagctttctcat |
36333614 |
T |
|
| Q |
102 |
ggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtatta |
201 |
Q |
| |
|
||||| | |||||||| |||||||||| | ||||||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
36333615 |
ggctttaccaaatcctttatctgtaatcaaacaacaatttacaagccgcatgcaacgtagctgactgccactgcaaaatttgaattaaaaagaactatta |
36333714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 36320931 - 36321046
Alignment:
| Q |
88 |
ggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatatt |
187 |
Q |
| |
|
||||||||||| | |||||| ||||||||| || ||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
36320931 |
ggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacttacaagccacatgcaacgtaggtgactgccactgtaaaatttat-tt |
36321029 |
T |
|
| Q |
188 |
aaaaagaagtattaaaa |
204 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
36321030 |
agaaagaactattaaaa |
36321046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 16053213 - 16053338
Alignment:
| Q |
63 |
tgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtagg |
162 |
Q |
| |
|
||||||| ||| |||||| || | |||||||| |||| |||||| |||||||||| |||| ||| | |||||| ||||| || |||| || ||||| |
|
|
| T |
16053213 |
tgaaatgacaagcttctctaacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaaccgcatggaacgtagg |
16053312 |
T |
|
| Q |
163 |
tgactgccactgtaaaatttatatta |
188 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
16053313 |
tgactgccactgtaaaatttaaatta |
16053338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University