View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_46 (Length: 225)
Name: NF19127_low_46
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 13574937 - 13574751
Alignment:
| Q |
21 |
taacagatccggtagagcaaaaccttttgttgtaccagtgacagtagacagaatgaggatcatcgttacacttccaaaaccaatcatcacataatttctg |
120 |
Q |
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| T |
13574937 |
taacaggtccggtagagcaaaaccttttgttgtaccagtgacagtagacagaatgaggatcatcgttacacttccaaaaccaatcatcacataatttctg |
13574838 |
T |
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| Q |
121 |
caattcaggcggaaacggcccatcaacctctacttcagcaatataggctccattgatcatagttgtcacaacaagaagaaccaaaac |
207 |
Q |
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| T |
13574837 |
caattcaggcggaaacggcccatcaacctctacttcagcactataggctccattgatcatagttgtcacaacaagaagaaccaaaac |
13574751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 13571359 - 13571194
Alignment:
| Q |
36 |
agcaaaaccttttgttgtaccagtgacagtagacagaatgaggatcatcgttacacttccaaaaccaatcatcacataatttctgcaattcaggcggaaa |
135 |
Q |
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| T |
13571359 |
agcaaaaccttttgttgtaccattgacaatagacagaattaggataatcgtaacacttccaataccaatcatcacatagtttctgcagtccaggcggcaa |
13571260 |
T |
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| Q |
136 |
cggcccatcaacctctacttcagcaatataggctccattgatcatagttgtcacaacaagaagaac |
201 |
Q |
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| T |
13571259 |
cggctcaccatcatctccttcagcaccataggctccattgatcatagttgtcacaacaaggagaac |
13571194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 13563963 - 13563910
Alignment:
| Q |
154 |
ttcagcaatataggctccattgatcatagttgtcacaacaagaagaaccaaaac |
207 |
Q |
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| T |
13563963 |
ttcagcactataggctccattgatcatagttgtcacaacaagaagaactaaaac |
13563910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 14203343 - 14203300
Alignment:
| Q |
164 |
taggctccattgatcatagttgtcacaacaagaagaaccaaaac |
207 |
Q |
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| T |
14203343 |
taggctccattgatcatagttgtcacaacaagaagaactaaaac |
14203300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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