View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_47 (Length: 205)
Name: NF19127_low_47
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 47322332 - 47322517
Alignment:
| Q |
19 |
aaaagcttccttactttccctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgta--------------annnnn |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47322332 |
aaaagcttccttactttccctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgtaatttttttattaagaatttt |
47322431 |
T |
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| Q |
105 |
nnnncttcaatggttggtagatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtg |
190 |
Q |
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| T |
47322432 |
ttttcttcaatggttggtagatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtg |
47322517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 47337128 - 47337313
Alignment:
| Q |
19 |
aaaagcttccttactttccctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgta--------------annnnn |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47337128 |
aaaagcttccttactttccctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgtaatttttttattaagaatttt |
47337227 |
T |
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| Q |
105 |
nnnncttcaatggttggtagatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtg |
190 |
Q |
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| T |
47337228 |
ttttcttcaatggttggtagatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtg |
47337313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 24668442 - 24668267
Alignment:
| Q |
19 |
aaaagcttccttactttccctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgtaa------------nnnnnnn |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24668442 |
aaaagcttccttactttccctcctcaaccttctcgaagctccaataccagagcttgcttcaacttcacctcacacctgtaatttttttaagattttgttt |
24668343 |
T |
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| Q |
107 |
nncttcaatggttggtagatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacat |
182 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24668342 |
ttcttcaatggttggtagatcatgatggatcaattgatgattatgggtttgatatatgttgaaggtaccaatacat |
24668267 |
T |
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