View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19127_low_9 (Length: 474)
Name: NF19127_low_9
Description: NF19127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19127_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 3 - 456
Target Start/End: Complemental strand, 8685346 - 8684894
Alignment:
| Q |
3 |
atgctgctatgattggtaaaggaacagaagcaaaaaatgctccaaattttcctgtttcaaggggaaataacaagtatcaaacatgagacatagcattggt |
102 |
Q |
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| T |
8685346 |
atgctgctatgattggtaaaggaacagaagcaaaaaatgctccaaactttcctgtttcaaggggaaataacaagtatcaaacatgagacatagcattggt |
8685247 |
T |
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| Q |
103 |
tattcctggtgtctgcgtgtatctcgtgtgcgtgtttgtgtccgtgctttatgggtagtttttcctagtaaactaccaatgccaagatgctgaaattatg |
202 |
Q |
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| T |
8685246 |
tattcctggtgtctgcgtgtatctcatgtgcgtgtttgtgtccgtgctttatgggtagttattcctagtaaactaccaatgccaagatgctgaaattatg |
8685147 |
T |
|
| Q |
203 |
aaattagtacaaaaaatattggtcaagacagtaccaaatacagagaagaaaatcataaagccggctgatatttgaattactcttctgcttcctacttttg |
302 |
Q |
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| T |
8685146 |
aaattagtacaaaaaatattggtcaagacagtaccaaatacagagaagaaaatcataaagccggctgatatttgaattactcttctgcttcctacttttg |
8685047 |
T |
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| Q |
303 |
ttaatgctagtaaaccagcattttccctgataaaaagagtaaagcagaaaggaattaagaaatgccctttaacagatcacaagttaacaaagatctacca |
402 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
8685046 |
ttaatgctagtaaaccagcattttccctgaaaaaaagagtaaagcagaaaggaattaagaaatgccctttaacagatcacaagctaacaaacatctacca |
8684947 |
T |
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| Q |
403 |
tgcattcaagaataaaaaacacaaggaattaggctgaacttacactgatgctgt |
456 |
Q |
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| T |
8684946 |
tgcattcaagaa-aaaaaacacaaggaattaggctgaacttacactgatgctgt |
8684894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 47581213 - 47581115
Alignment:
| Q |
234 |
taccaaatacagagaagaaaatcataaagccggctgatatttgaattactcttctgcttcctacttttgttaatgctagtaaaccagcattttccctga |
332 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||| || ||||||| |||||| ||| |||| ||||| | || ||||| |||||||||| |
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| T |
47581213 |
taccaaatacagaaaagaaaatcataaaaccagctgatatttggatgactcttcggcttcccactcttgtcaatgccaatagtccagcgttttccctga |
47581115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 47581441 - 47581388
Alignment:
| Q |
3 |
atgctgctatgattggtaaaggaacagaagcaaaaaatgctccaaattttcctg |
56 |
Q |
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||||||| |||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
47581441 |
atgctgccatgattggcaaaggtatagaagcaaaaaatgctccaaattttcctg |
47581388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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