View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_high_11 (Length: 539)

Name: NF19128_high_11
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_high_11
NF19128_high_11
[»] chr7 (21 HSPs)
chr7 (1-173)||(47115921-47116093)
chr7 (247-444)||(47115672-47115865)
chr7 (443-521)||(30415999-30416077)
chr7 (379-444)||(47985203-47985268)
chr7 (379-444)||(24525919-24525984)
chr7 (394-445)||(19691896-19691947)
chr7 (379-429)||(20091515-20091565)
chr7 (379-445)||(38415109-38415175)
chr7 (379-443)||(25010254-25010318)
chr7 (379-430)||(28749595-28749646)
chr7 (385-428)||(31453706-31453749)
chr7 (379-430)||(48984078-48984129)
chr7 (386-432)||(20152912-20152958)
chr7 (386-432)||(26918031-26918077)
chr7 (381-434)||(7398166-7398219)
chr7 (394-435)||(12596445-12596486)
chr7 (378-435)||(18777018-18777075)
chr7 (384-425)||(27237763-27237804)
chr7 (380-441)||(44601389-44601450)
chr7 (380-441)||(44601557-44601618)
chr7 (380-441)||(44601725-44601786)
[»] chr3 (23 HSPs)
chr3 (1-162)||(6935836-6935997)
chr3 (51-162)||(50483095-50483206)
chr3 (378-421)||(50483399-50483442)
chr3 (379-448)||(43207475-43207544)
chr3 (379-444)||(53507118-53507183)
chr3 (51-123)||(29642294-29642366)
chr3 (379-445)||(44708281-44708347)
chr3 (394-444)||(48156942-48156992)
chr3 (379-444)||(34290875-34290940)
chr3 (378-445)||(6937588-6937655)
chr3 (394-445)||(9878935-9878986)
chr3 (378-448)||(36716275-36716345)
chr3 (378-435)||(38681347-38681404)
chr3 (379-444)||(50939469-50939534)
chr3 (68-161)||(53489497-53489590)
chr3 (378-435)||(54619453-54619510)
chr3 (378-430)||(27078818-27078870)
chr3 (378-430)||(27084615-27084667)
chr3 (379-435)||(50258735-50258791)
chr3 (395-426)||(33426368-33426399)
chr3 (379-425)||(23641464-23641510)
chr3 (394-435)||(3954868-3954909)
chr3 (379-428)||(36605862-36605911)
[»] chr5 (19 HSPs)
chr5 (1-145)||(4931502-4931646)
chr5 (51-162)||(34856183-34856294)
chr5 (378-444)||(34855925-34855990)
chr5 (295-442)||(4931793-4931938)
chr5 (386-444)||(34221204-34221261)
chr5 (379-444)||(16199027-16199092)
chr5 (383-444)||(24395445-24395506)
chr5 (82-161)||(35192533-35192612)
chr5 (379-445)||(38869594-38869660)
chr5 (379-444)||(27923885-27923950)
chr5 (379-435)||(15480230-15480286)
chr5 (379-435)||(19523102-19523158)
chr5 (378-430)||(34756614-34756666)
chr5 (379-430)||(16799557-16799608)
chr5 (396-435)||(30853275-30853314)
chr5 (394-444)||(40389781-40389831)
chr5 (394-435)||(31881606-31881647)
chr5 (51-123)||(8433297-8433369)
chr5 (379-435)||(36188020-36188076)
[»] chr4 (25 HSPs)
chr4 (8-162)||(22315456-22315613)
chr4 (250-444)||(22315684-22315873)
chr4 (378-429)||(24404213-24404264)
chr4 (379-446)||(16844825-16844892)
chr4 (381-444)||(17353605-17353668)
chr4 (379-441)||(54083479-54083541)
chr4 (379-432)||(1105443-1105496)
chr4 (379-436)||(24969250-24969307)
chr4 (379-444)||(38352490-38352554)
chr4 (395-444)||(54779441-54779490)
chr4 (378-435)||(55255089-55255146)
chr4 (379-435)||(10431443-10431499)
chr4 (51-123)||(31880386-31880458)
chr4 (379-443)||(32128394-32128457)
chr4 (395-447)||(35780573-35780625)
chr4 (394-444)||(37777475-37777525)
chr4 (378-428)||(38209841-38209891)
chr4 (379-428)||(40089340-40089389)
chr4 (394-446)||(2790990-2791042)
chr4 (394-430)||(5128999-5129035)
chr4 (379-435)||(17679226-17679282)
chr4 (395-439)||(27596656-27596700)
chr4 (394-430)||(45560720-45560756)
chr4 (379-435)||(47127990-47128046)
chr4 (379-435)||(48208459-48208515)
[»] chr1 (20 HSPs)
chr1 (7-162)||(5127866-5128019)
chr1 (378-444)||(5128247-5128313)
chr1 (379-445)||(9173256-9173322)
chr1 (379-444)||(1367112-1367177)
chr1 (379-444)||(13913717-13913782)
chr1 (379-448)||(39135063-39135132)
chr1 (379-444)||(40502025-40502090)
chr1 (51-123)||(24184121-24184193)
chr1 (394-445)||(44895466-44895517)
chr1 (379-444)||(17168769-17168834)
chr1 (378-435)||(44655548-44655605)
chr1 (379-435)||(6771705-6771761)
chr1 (379-435)||(14146214-14146270)
chr1 (378-430)||(27906948-27907000)
chr1 (399-444)||(23181711-23181756)
chr1 (394-435)||(41697295-41697336)
chr1 (379-435)||(6888478-6888534)
chr1 (396-444)||(10912112-10912160)
chr1 (387-427)||(50146055-50146095)
chr1 (378-446)||(51607673-51607741)
[»] chr2 (25 HSPs)
chr2 (53-162)||(25194192-25194301)
chr2 (7-162)||(21190546-21190703)
chr2 (7-162)||(30175808-30175965)
chr2 (51-162)||(45156016-45156126)
chr2 (378-445)||(30175518-30175585)
chr2 (378-444)||(21190926-21190992)
chr2 (378-444)||(45156347-45156413)
chr2 (8-120)||(36948309-36948420)
chr2 (378-444)||(25192754-25192820)
chr2 (379-444)||(26715931-26715996)
chr2 (379-446)||(24410234-24410301)
chr2 (381-435)||(36949286-36949340)
chr2 (379-444)||(9045832-9045897)
chr2 (379-444)||(27506976-27507041)
chr2 (384-434)||(29694094-29694144)
chr2 (378-435)||(3155012-3155069)
chr2 (378-435)||(6964801-6964858)
chr2 (384-440)||(21258491-21258547)
chr2 (379-430)||(3952913-3952964)
chr2 (381-439)||(21666036-21666094)
chr2 (378-435)||(4505688-4505745)
chr2 (378-435)||(34693156-34693213)
chr2 (378-435)||(34715568-34715625)
chr2 (395-435)||(7162686-7162726)
chr2 (379-435)||(12337690-12337746)
[»] chr8 (16 HSPs)
chr8 (7-136)||(18808415-18808544)
chr8 (379-446)||(42600582-42600649)
chr8 (378-440)||(18808694-18808755)
chr8 (381-426)||(9107804-9107849)
chr8 (58-123)||(44022025-44022090)
chr8 (51-117)||(9491442-9491508)
chr8 (378-435)||(2952472-2952529)
chr8 (378-435)||(5860995-5861052)
chr8 (378-430)||(3048773-3048825)
chr8 (384-424)||(5973367-5973407)
chr8 (379-435)||(20003877-20003933)
chr8 (379-425)||(5721444-5721490)
chr8 (394-444)||(10917194-10917244)
chr8 (379-437)||(23606856-23606914)
chr8 (379-448)||(23798496-23798565)
chr8 (378-427)||(30883127-30883176)
[»] chr6 (18 HSPs)
chr6 (51-162)||(11081358-11081469)
chr6 (91-163)||(21307713-21307785)
chr6 (378-441)||(11081683-11081746)
chr6 (379-448)||(17353755-17353824)
chr6 (379-444)||(19986966-19987031)
chr6 (379-446)||(20711953-20712020)
chr6 (82-161)||(30123878-30123957)
chr6 (384-434)||(20611514-20611564)
chr6 (379-440)||(27788923-27788984)
chr6 (57-123)||(11574806-11574872)
chr6 (394-447)||(235475-235528)
chr6 (379-430)||(23070890-23070941)
chr6 (378-435)||(13727649-13727706)
chr6 (394-435)||(19741239-19741280)
chr6 (394-435)||(21280342-21280383)
chr6 (378-435)||(21479293-21479350)
chr6 (394-435)||(27314780-27314821)
chr6 (379-428)||(30832668-30832717)
[»] scaffold0039 (1 HSPs)
scaffold0039 (379-444)||(106379-106444)
[»] scaffold0683 (1 HSPs)
scaffold0683 (56-114)||(4531-4589)
[»] scaffold0027 (1 HSPs)
scaffold0027 (396-458)||(4135-4197)
[»] scaffold0070 (1 HSPs)
scaffold0070 (394-435)||(1020-1061)
[»] scaffold0090 (1 HSPs)
scaffold0090 (51-123)||(50986-51058)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 47116093 - 47115921
Alignment:
Q  1 atgagtcaaaaattacaagtgttctaacaaaataagaagnnnnnnntttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaattt 100  Q
    ||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||| || ||||||||| ||||||||||    
T  47116093 atgagtcaaaaattacaagtgttctaacaaactaagaagaaaataatttgtattatgttttcatttgtaaatatataatccaatatgtttaggagaattt 47115994  T
Q  101 ggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaagtttctcatact 173  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  47115993 ggctaaattgaagagaggatagatgaacctcaaatatataaaaaataatgtctaaatcaaagtctctcatact 47115921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 444
Target Start/End: Complemental strand, 47115865 - 47115672
Alignment:
Q  247 gagtgttgaaccagagacctagcc-ataccagcctgcaactataccactccactaggccacttccgcaaatgtgaaatttaacactcgctctatatattt 345  Q
    ||||||||||| |||||| ||| | |||||||||||||||||||||| | | |     ||||||||||||| ||| ||||| ||||||||||||||||||    
T  47115865 gagtgttgaactagagacttaggctataccagcctgcaactataccattaccc-----cacttccgcaaatatgatatttatcactcgctctatatattt 47115771  T
Q  346 aatattttttaactgggctataannnnnnnnnatgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||| ||||||||||| |||         ||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  47115770 aatatttcttaactgggctgtaattttttttaatgaggctcataccttaaggaggtccaactccattgagctgtttgcaccccctaagggccgggcctg 47115672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 443 - 521
Target Start/End: Complemental strand, 30416077 - 30415999
Alignment:
Q  443 tgattacaatacaacaaacatgtataaacttgacccagcttctttttccttaagagttaataagatttgttttacagtt 521  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30416077 tgattacaatacaacaaacatggataaacttgacccagcttctttttccttaagagttaataagatttgttttacagtt 30415999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 47985203 - 47985268
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  47985203 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 24525919 - 24525984
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||||| |||||||    
T  24525919 tgaggcccatgactaagggaggcccagctctgttgagctgtttgcaccccctcagggctgggcctg 24525984  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 445
Target Start/End: Complemental strand, 19691947 - 19691896
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    |||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  19691947 agggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 20091515 - 20091565
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccc 429  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||||||||    
T  20091515 tgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccc 20091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 38415109 - 38415175
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    ||||||||||  || |||||||||||||||  |||||||||||||| ||||| || |||||||||||    
T  38415109 tgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 25010318 - 25010254
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcct 443  Q
    ||||||||||  || ||||||||||| |||  |||||||||||| ||||||| ||||||||||||    
T  25010318 tgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Complemental strand, 28749646 - 28749595
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  28749646 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 28749595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 31453706 - 31453749
Alignment:
Q  385 ccataccttagggaggcccagctccattgagctgtttgcacccc 428  Q
    |||||| ||||||||||||| || ||||||||||||||||||||    
T  31453706 ccatactttagggaggcccatctgcattgagctgtttgcacccc 31453749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 48984078 - 48984129
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||  || |||||||||||||||  ||||||||||||||||||||    
T  48984078 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccct 48984129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 20152958 - 20152912
Alignment:
Q  386 cataccttagggaggcccagctccattgagctgtttgcaccccctaa 432  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||||||    
T  20152958 cataccttagagaggctcagctccattgagctctttgcacaccctaa 20152912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 26918031 - 26918077
Alignment:
Q  386 cataccttagggaggcccagctccattgagctgtttgcaccccctaa 432  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||    
T  26918031 cataccttagagatgcccagctccattgagctctttgcacaccctaa 26918077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 7398219 - 7398166
Alignment:
Q  381 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagg 434  Q
    ||||||||||||| ||||||| |||||||||||||||  |||||| ||| ||||    
T  7398219 aggcccataccttggggaggctcagctccattgagctcgttgcacaccccaagg 7398166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 12596445 - 12596486
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  12596445 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 12596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 18777018 - 18777075
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||| ||| ||||    
T  18777018 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcaggg 18777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 27237763 - 27237804
Alignment:
Q  384 cccataccttagggaggcccagctccattgagctgtttgcac 425  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  27237763 cccatacctcagggaggcccaactccattgagctctttgcac 27237804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 44601450 - 44601389
Alignment:
Q  380 gaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 441  Q
    |||||||||| |||  ||||| ||||||| |||||| |||||||||||||| | ||||||||    
T  44601450 gaggcccatatcttgaggaggtccagctctattgagatgtttgcaccccctcaaggccgggc 44601389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 44601618 - 44601557
Alignment:
Q  380 gaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 441  Q
    |||||||||| |||  ||||| ||||||| |||||| |||||||||||||| | ||||||||    
T  44601618 gaggcccatatcttgaggaggtccagctctattgagatgtttgcaccccctcaaggccgggc 44601557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 44601786 - 44601725
Alignment:
Q  380 gaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 441  Q
    |||||||||| |||  ||||| ||||||| |||||| |||||||||||||| | ||||||||    
T  44601786 gaggcccatatcttgaggaggtccagctctattgagatgtttgcaccccctcaaggccgggc 44601725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 6935836 - 6935997
Alignment:
Q  1 atgagtcaaaaattacaagtgttctaacaaaataagaagnnnnnnntttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaattt 100  Q
    ||||| ||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  6935836 atgagccaaaaattagaagtgttctaacaaaataagaagaaaaaaatttgtattatgttttcatttgtaaatatataatccaacatgttaaggagaattt 6935935  T
Q  101 ggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaag 162  Q
    || ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  6935936 ggttaaattgaagagatgatagatgaacctcaaatccataaaaaataatgtctaaatcaaag 6935997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 50483095 - 50483206
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatg 150  Q
    |||||||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||    
T  50483095 tattatgttttcatttgtaaatatataatcaaatatgttaaggataatttggctaaattgaagagatgatagataaacttcaaatccataaaaaataatg 50483194  T
Q  151 tctaaatcaaag 162  Q
    ||||| ||||||    
T  50483195 tctaagtcaaag 50483206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 50483399 - 50483442
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgttt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50483399 atgaggcccataccttagggaggcccagctccattgagctgttt 50483442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 43207475 - 43207544
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 448  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||| |||||||||||||    
T  43207475 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgatta 43207544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 53507118 - 53507183
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  53507118 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 53507183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 29642294 - 29642366
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    ||||||||||| |||||||||||||| ||  ||||||||||||| ||||| ||| ||||| ||||||||||||    
T  29642294 tattatgtttttatttgtaaatatataatctaatatgttaaggaaaatttagctgaattggagagaggattga 29642366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 44708347 - 44708281
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| || |||||||||||    
T  44708347 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 48156992 - 48156942
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  48156992 agggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 34290875 - 34290940
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||| ||| ||||||||||| |||  |||||||||||||||||||| |||| ||||||||    
T  34290875 tgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcagggtcgggcctg 34290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 6937588 - 6937655
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    ||||| ||||||| || || |||||||||||||||||||| ||||||||||| || || |||||||||    
T  6937588 atgagacccatacattgggaaggcccagctccattgagctatttgcaccccccaaaggtcgggcctga 6937655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 9878935 - 9878986
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    |||||||||||||||  |||||||||||||||||||| |||||||| |||||    
T  9878935 agggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 36716275 - 36716345
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 448  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| |||| ||  ||||||||    
T  36716275 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgatta 36716345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 38681347 - 38681404
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  38681347 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 38681404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 50939469 - 50939534
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||| ||| |||| ||||||||    
T  50939469 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 53489497 - 53489590
Alignment:
Q  68 taaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaa 161  Q
    ||||||||| |  |||||||||||||||||||||| | ||||| ||||| |||||| || ||||||||| | || |||| ||||| ||| ||||    
T  53489497 taaatatataacccaatatgttaaggagaatttggttgaattggagagaagattgaggagcctcaaatccacaataaattatgtccaaaccaaa 53489590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 54619453 - 54619510
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  54619453 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 54619510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 27078818 - 27078870
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  27078818 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 27078870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 27084615 - 27084667
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  27084615 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 27084667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 50258735 - 50258791
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  50258735 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctcaggg 50258791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 426
Target Start/End: Complemental strand, 33426399 - 33426368
Alignment:
Q  395 gggaggcccagctccattgagctgtttgcacc 426  Q
    ||||||||||||||||||||||||||||||||    
T  33426399 gggaggcccagctccattgagctgtttgcacc 33426368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 425
Target Start/End: Original strand, 23641464 - 23641510
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcac 425  Q
    ||||||||||||||| ||||||||| | |||||||||| ||||||||    
T  23641464 tgaggcccataccttggggaggcccggttccattgagcggtttgcac 23641510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 3954868 - 3954909
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  3954868 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 3954909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 36605911 - 36605862
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 428  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36605862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 4931502 - 4931646
Alignment:
Q  1 atgagtcaaaaattacaagtgttctaacaaaataagaagnnnnnnntttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaattt 100  Q
    ||||| |||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4931502 atgagccaaaaattacaagtgttctaacaaaataagaagaaaaaaatttatattatgttttcatttgtaaatatataatccaatatgttaaggagaattt 4931601  T
Q  101 ggctaaattgaagagaggattgatgaacctcaaatctataaaaaa 145  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  4931602 ggctaaattgaagagaggatagatgaacctcaaatctataaaaaa 4931646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 34856294 - 34856183
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatg 150  Q
    |||||||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||  |||||||||||||    
T  34856294 tattatgttttcatttgtaaatatataatcaaatatgttaaggataatttggctaaattgaagagatgatagatgaacttcaaattcataaaaaataatg 34856195  T
Q  151 tctaaatcaaag 162  Q
    ||||| ||||||    
T  34856194 tctaagtcaaag 34856183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 34855990 - 34855925
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  34855990 atgaggcccataccttagggaggcccagctccatttagctgtttgca-tccctaagggccgggcctg 34855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 442
Target Start/End: Original strand, 4931793 - 4931938
Alignment:
Q  295 ccactaggccacttccgcaaatgtgaaatttaacactcgctctatatatttaatattttttaactgggctataannnnnnnnnatgaggcccatacctta 394  Q
    ||||| |||||||||| ||||| ||| |||||||||||| |||||||| |||||||| || | |||| ||||||         ||||||| ||||||||     
T  4931793 ccactgggccacttccacaaatatgatatttaacactcgatctatataattaatattgtt-agctggactataatttttttt-atgaggcgcataccttg 4931890  T
Q  395 gggaggcccagctccattgagctgtttgcaccccctaagggccgggcc 442  Q
    |||||| |||||||||||||||| |||||||||||||| || ||||||    
T  4931891 gggaggtccagctccattgagctatttgcaccccctaaaggtcgggcc 4931938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 34221204 - 34221261
Alignment:
Q  386 cataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||    
T  34221204 cataccttagggaggtccagctccattgagctgttcgca-cccctaagggccggtcctg 34221261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 16199027 - 16199092
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||||||| |||||    
T  16199027 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgcgcctg 16199092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 24395506 - 24395445
Alignment:
Q  383 gcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||| |||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  24395506 gcccataccttggggaggcctagctccattgagctctttgcacgccctaaggtccggccctg 24395445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 35192612 - 35192533
Alignment:
Q  82 aatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaa 161  Q
    ||||||||||||| ||||||||| ||||| |||||||||  | || |||||||||||||| |||| ||||| ||| ||||    
T  35192612 aatatgttaaggataatttggctgaattggagagaggataaacgagcctcaaatctataataaattatgtccaaaacaaa 35192533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 38869594 - 38869660
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    ||||||||||  || ||||||||||||||   |||||||||||||||||||| | ||||||||||||    
T  38869594 tgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 27923950 - 27923885
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || ||||||| |||||||  |||||||||||||||||||| |||| ||||||||    
T  27923950 tgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 15480230 - 15480286
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  15480230 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 15480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 19523158 - 19523102
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  19523158 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 19523102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 34756614 - 34756666
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  34756614 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 34756666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 16799557 - 16799608
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||  || ||||||||| ||||| |||||||||||||||||||||    
T  16799557 tgaggcccatgactgagggaggcctagctctattgagctgtttgcaccccct 16799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Complemental strand, 30853314 - 30853275
Alignment:
Q  396 ggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  30853314 ggaggcccagctcgtttgagctgtttgcaccccctaaggg 30853275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 40389781 - 40389831
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||| ||  ||||||||||||||||| || |||||||||||||    
T  40389781 agggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 31881606 - 31881647
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  31881606 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 31881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 8433297 - 8433369
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    |||| |||||| |||||||||||||| ||  || |||||||||||||||| | | ||||||| |||| |||||    
T  8433297 tattgtgtttttatttgtaaatatataatctaacatgttaaggagaatttagttgaattgaatagagtattga 8433369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 36188020 - 36188076
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  36188020 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 36188076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 22315456 - 22315613
Alignment:
Q  8 aaaaattacaagtgttctaacaaaataagaagnnnnnnntttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaa 107  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||    
T  22315456 aaaaattacaagtgttctaacaaaataagaagaaaaaaatttgtattatgttttcatttgtaaatatataatccaatatgttgaagagaatttggctaaa 22315555  T
Q  108 ttgaagagaggattgatgaacctcaaatctat---aaaaaataatgtctaaatcaaag 162  Q
    |||| |||||||| ||||||||||||||||||   ||||||| |||||||||||||||    
T  22315556 ttgatgagaggatagatgaacctcaaatctataaaaaaaaatgatgtctaaatcaaag 22315613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 250 - 444
Target Start/End: Original strand, 22315684 - 22315873
Alignment:
Q  250 tgttgaaccagagacctagcca-taccagcctgcaactataccactccactaggccacttccgcaaatgtgaaatttaacactcgctctatatatttaat 348  Q
    |||||||| |||||||||| || ||||| | ||||||||||||||     |||||||||||| ||||| |||  ||||||||||||||||||||||||||    
T  22315684 tgttgaactagagacctaggcaataccaacttgcaactataccac-----taggccacttccacaaatatgatgtttaacactcgctctatatatttaat 22315778  T
Q  349 attttttaactgggctataannnnnnnnnatgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||| |||||||||||||||         ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  22315779 atttgttaactgggctataa-ttttttttatgaggctcataccttggggaggtccagctccattgagctgtttgcaccccctaagggccgagcctg 22315873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 24404264 - 24404213
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccc 429  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24404264 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccc 24404213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 16844892 - 16844825
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 446  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |  ||||||||||||    
T  16844892 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 16844825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 17353668 - 17353605
Alignment:
Q  381 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||| ||||| || ||||||| ||||||||||||||||||||||||||| |||||  |||||||    
T  17353668 aggctcatacattggggaggctcagctccattgagctgtttgcaccccccaagggttgggcctg 17353605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 54083479 - 54083541
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 441  Q
    ||||||||||  || ||||| ||||||||| ||||||||||||||||||||| |||| |||||    
T  54083479 tgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacgggc 54083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 1105496 - 1105443
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaa 432  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||||    
T  1105496 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctaa 1105443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 24969307 - 24969250
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggc 436  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||    
T  24969307 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggc 24969250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 38352490 - 38352554
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||| ||||| |||||||||||||    
T  38352490 tgaggcccatgactaagggaggcccagctctgttgagctgtttgca-cccctcagggccgggcctg 38352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 54779490 - 54779441
Alignment:
Q  395 gggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||||||  ||||||||||||||| |||| |||||||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 55255146 - 55255089
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  55255146 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 55255089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 10431443 - 10431499
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  10431443 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 10431499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 31880386 - 31880458
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    |||| |||||| |||||||||||||| ||  ||||||||||||||||||||| | ||| ||| |||| |||||    
T  31880386 tattgtgtttttatttgtaaatatataatctaatatgttaaggagaatttggttgaatggaatagagtattga 31880458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 32128457 - 32128394
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcct 443  Q
    ||||| ||||| || |||||||||||||||  |||||||||||||||||||| | ||||||||||    
T  32128457 tgaggtccataactgagggaggcccagctctgttgagctgtttgcaccccctca-ggccgggcct 32128394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 35780573 - 35780625
Alignment:
Q  395 gggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatt 447  Q
    ||||||||||||||  ||||||||||||||||||||  | |||||||||||||    
T  35780573 gggaggcccagctcggttgagctgtttgcaccccctcggagccgggcctgatt 35780625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 37777475 - 37777525
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||| |||||||  |||||||||||||||||||| | |||||||||||    
T  37777475 agggaggtccagctctgttgagctgtttgcaccccctcaaggccgggcctg 37777525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 38209841 - 38209891
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 428  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  38209841 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38209891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 40089389 - 40089340
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 428  Q
    ||||||||||  || |||||||||||||||  ||||||||||||||||||    
T  40089389 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 40089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 2790990 - 2791042
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 446  Q
    |||||| ||||||||  |||||||||||||||||||| || | ||||||||||    
T  2790990 agggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgat 2791042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 5128999 - 5129035
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccct 430  Q
    |||||||||||||||  ||||||||||||||||||||    
T  5128999 agggaggcccagctcgtttgagctgtttgcaccccct 5129035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 17679282 - 17679226
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||| ||||||  |||||||||||||||||||| ||||    
T  17679282 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcaggg 17679226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 27596656 - 27596700
Alignment:
Q  395 gggaggcccagctccattgagctgtttgcaccccctaagggccgg 439  Q
    ||||||||||||||  |||||||||| ||||||||| ||||||||    
T  27596656 gggaggcccagctcgtttgagctgttcgcaccccctcagggccgg 27596700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 45560720 - 45560756
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccct 430  Q
    |||||||||||||||  ||||||||||||||||||||    
T  45560720 agggaggcccagctcgtttgagctgtttgcaccccct 45560756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 47128046 - 47127990
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  ||| |||||||||||||||| ||||    
T  47128046 tgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctcaggg 47127990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 48208515 - 48208459
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  48208515 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 48208459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 5127866 - 5128019
Alignment:
Q  7 caaaaattacaagtgttctaacaaaataagaagnnnnnnntttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaa 106  Q
    |||||||||||||| |||||||||||||||||         || |||||||||||||||||||||||||| ||  ||||| ||||||||| |||||||||    
T  5127866 caaaaattacaagtcttctaacaaaataagaaaaaaaaa--ttatattatgttttcatttgtaaatatataatctaatattttaaggagattttggctaa 5127963  T
Q  107 attgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaag 162  Q
    |||||||||||||| ||||||||||||||| | | |||||||||| ||||||||||    
T  5127964 attgaagagaggatagatgaacctcaaatccagataaaataatgtataaatcaaag 5128019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 5128247 - 5128313
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||| ||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5128247 atgaggcccatatcttggagaggcccagctccattgagctgtttacaccccccaagggccgggcctg 5128313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 9173256 - 9173322
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    ||||||||||  || ||||||||||| |||  |||||||||||||||||||| ||||||||||||||    
T  9173256 tgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 1367112 - 1367177
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||||||| |||||    
T  1367112 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgtgcctg 1367177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 13913717 - 13913782
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  13913717 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 39135063 - 39135132
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 448  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| ||||  ||| ||||||||    
T  39135063 tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctgatta 39135132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 40502025 - 40502090
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  40502025 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 24184121 - 24184193
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    |||| |||||| |||||||||||||| ||  ||||||||||||||||||||| | ||||||| |||| |||||    
T  24184121 tattgtgtttttatttgtaaatatataatctaatatgttaaggagaatttggttgaattgaatagagtattga 24184193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 445
Target Start/End: Complemental strand, 44895517 - 44895466
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    |||||||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  44895517 agggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 17168834 - 17168769
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || ||||||||| ||||| ||||||||||||||| ||||| |||| ||||||||    
T  17168834 tgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctcagggtcgggcctg 17168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 44655605 - 44655548
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  44655605 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 44655548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 6771761 - 6771705
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  6771761 tgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccctcaggg 6771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 14146270 - 14146214
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  14146270 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 14146214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 27906948 - 27907000
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  27906948 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 27907000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 23181756 - 23181711
Alignment:
Q  399 ggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  |||||||||||||||||||| |||||||| ||||    
T  23181756 ggcccagctcggttgagctgtttgcaccccctcagggccggccctg 23181711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 41697295 - 41697336
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  41697295 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 41697336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 6888534 - 6888478
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  6888534 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 6888478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 10912112 - 10912160
Alignment:
Q  396 ggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||||  |||||||||| ||||||||| |||||||| ||||    
T  10912112 ggaggcccagctcgtttgagctgttcgcaccccctcagggccggccctg 10912160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 50146095 - 50146055
Alignment:
Q  387 ataccttagggaggcccagctccattgagctgtttgcaccc 427  Q
    ||||||||| |||||||| |||||||||||||||| |||||    
T  50146095 ataccttagtgaggcccaactccattgagctgtttacaccc 50146055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 51607673 - 51607741
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 446  Q
    |||||||||||   | ||| ||||||||||| ||||||||||||||||| ||| | | |||||||||||    
T  51607673 atgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgat 51607741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 25194301 - 25194192
Alignment:
Q  53 ttatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtc 152  Q
    |||||||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||    
T  25194301 ttatgttttcatttgtaaatatataatcaaatatgttaaggggaatttggctaaattgaagagatgatagatgaacttcaaatccataaaaaataatgtc 25194202  T
Q  153 taaatcaaag 162  Q
    ||| ||||||    
T  25194201 taagtcaaag 25194192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 21190546 - 21190703
Alignment:
Q  7 caaaaattacaagtgttctaacaaaataagaagnnnnnnnt--ttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggct 104  Q
    |||||||||||||| ||||||||||||||||||          || |||||||||||||||||||||||||| ||  ||||| ||||| ||| |||||||    
T  21190546 caaaaattacaagtcttctaacaaaataagaagaagaaaaaaattatattatgttttcatttgtaaatatataatctaatatattaagaagattttggct 21190645  T
Q  105 aaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaag 162  Q
    |||||||||||| ||| ||||||||||||||| | | |||||||||| ||||||||||    
T  21190646 aaattgaagagaagatagatgaacctcaaatccagataaaataatgtataaatcaaag 21190703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 30175965 - 30175808
Alignment:
Q  7 caaaaattacaagtgttctaacaaaataagaagnnnnnnnt--ttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggct 104  Q
    |||||||||||||| ||||||||||||||||||          || |||||||||||||||||||||||||| ||  ||||| ||||| ||| |||||||    
T  30175965 caaaaattacaagtcttctaacaaaataagaagaagaaaaaaattatattatgttttcatttgtaaatatataatctaatatattaagaagattttggct 30175866  T
Q  105 aaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaag 162  Q
    |||||||||||| ||| ||||||||||||||| | | |||||||||| ||||||||||    
T  30175865 aaattgaagagaagatagatgaacctcaaatccagataaaataatgtataaatcaaag 30175808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 45156016 - 45156126
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatg 150  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||| ||||||| ||||||||||||||| |||||||||||| || | | |||||||||    
T  45156016 tattatgttttcatttgtaaatatataatctaatatgttaaggagattttggct-aattgaagagaggatagatgaacctcaattccacataaaataatg 45156114  T
Q  151 tctaaatcaaag 162  Q
    | ||||||||||    
T  45156115 tataaatcaaag 45156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 30175585 - 30175518
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 445  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30175585 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgggcctga 30175518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 21190926 - 21190992
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21190926 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgggcctg 21190992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 45156347 - 45156413
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  45156347 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgagcctg 45156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 36948309 - 36948420
Alignment:
Q  8 aaaaattacaagtgttctaacaaaataagaagnnnnnnnt-ttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaa 106  Q
    |||||||||||||||| |||||||||||||||         || |||||||||||||||||||||||||| ||||||||  ||||||||||||||||| |    
T  36948309 aaaaattacaagtgttataacaaaataagaagaagaaaaaattatattatgttttcatttgtaaatatataattcaata--ttaaggagaatttggctga 36948406  T
Q  107 attgaagagaggat 120  Q
    ||||||||||||||    
T  36948407 attgaagagaggat 36948420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 25192820 - 25192754
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  25192820 atgagacccataccttagggaggcctagctccattgagctatttgcacctcctaagggccggacctg 25192754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 26715996 - 26715931
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  26715996 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 24410301 - 24410234
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 446  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||||    
T  24410301 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacgggcctgat 24410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 36949286 - 36949340
Alignment:
Q  381 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  36949286 aggcccgtaccttgggaaggcccagctccattgagctgtttgcaccccccaaggg 36949340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 9045897 - 9045832
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||| |||||||||    
T  9045897 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctg 9045832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 27506976 - 27507041
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  27506976 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 29694144 - 29694094
Alignment:
Q  384 cccataccttagggaggcccagctccattgagctgtttgcaccccctaagg 434  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  29694144 cccataccttaaggaggcccagctccattgagctctttgcacaccccaagg 29694094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 3155069 - 3155012
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  3155069 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 3155012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 6964858 - 6964801
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  6964858 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 6964801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 21258491 - 21258547
Alignment:
Q  384 cccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccggg 440  Q
    ||||||||||  ||||| |||||||||||||| |||||||||||||| | |||||||    
T  21258491 cccataccttgaggaggtccagctccattgagttgtttgcaccccctcaaggccggg 21258547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Complemental strand, 3952964 - 3952913
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  3952964 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 3952913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 21666036 - 21666094
Alignment:
Q  381 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgg 439  Q
    ||||||||||||| ||||||||||| |||||||||||  |||||| ||| |||| ||||    
T  21666036 aggcccataccttggggaggcccagttccattgagctccttgcacaccccaaggtccgg 21666094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 4505745 - 4505688
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||   | |||||||||||||||  |||||||||||||||||||| ||||    
T  4505745 atgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 4505688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 34693213 - 34693156
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  34693213 atgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 34693156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 34715625 - 34715568
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  34715625 atgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 34715568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 7162726 - 7162686
Alignment:
Q  395 gggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  7162726 gggaggcccagctcgtttgagctgtttgcaccccctcaggg 7162686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 12337690 - 12337746
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||| ||||||  |||||||||||||||||||| ||||    
T  12337690 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcaggg 12337746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 18808415 - 18808544
Alignment:
Q  7 caaaaattacaagtgttctaacaaaataagaagnnnnnnntttgtattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaa 106  Q
    |||||||||||||| ||||||||||||||||||        || |||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||    
T  18808415 caaaaattacaagtcttctaacaaaataagaagaaaaaaaattatattatgttttcatttgtaaatatataatctaatatgttaaggagattttggctaa 18808514  T
Q  107 attgaagagaggattgatgaacctcaaatc 136  Q
    |||||||||| |||  ||||||||||||||    
T  18808515 attgaagagatgataaatgaacctcaaatc 18808544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 42600649 - 42600582
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 446  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||||    
T  42600649 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 18808694 - 18808755
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccggg 440  Q
    ||||||| |||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||    
T  18808694 atgaggctcataccttggggaggcctagctccaatgagctgtttgcaccccc-aagggccggg 18808755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 9107849 - 9107804
Alignment:
Q  381 aggcccataccttagggaggcccagctccattgagctgtttgcacc 426  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||    
T  9107849 aggcccataccttggggaggcccaactccattgagctgtttgcacc 9107804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 44022090 - 44022025
Alignment:
Q  58 ttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||| | ||||||| |||| |||||    
T  44022090 ttttcatttgtaaatatataatctaatatgttaaggagaatttggttgaattgaatagagtattga 44022025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 9491442 - 9491508
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagag 117  Q
    |||| |||||| |||||||||||||| ||  ||||||||||||||||||||| | ||||||| ||||    
T  9491442 tattgtgtttttatttgtaaatatataatgtaatatgttaaggagaatttggttgaattgaatagag 9491508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 2952472 - 2952529
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  2952472 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 2952529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 5860995 - 5861052
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  5860995 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 5861052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 3048773 - 3048825
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  3048773 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 3048825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 5973367 - 5973407
Alignment:
Q  384 cccataccttagggaggcccagctccattgagctgtttgca 424  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  5973367 cccataccttggggaggcccagctccattgagcggtttgca 5973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 20003877 - 20003933
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  20003877 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 20003933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 5721490 - 5721444
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcac 425  Q
    |||||||||| |||| ||||||||||| |||||||||| ||||||||    
T  5721490 tgaggcccatgccttggggaggcccagttccattgagcggtttgcac 5721444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 10917244 - 10917194
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||||||  |||||||||||||||||||| | || ||||||||    
T  10917244 agggaggcccagctctgttgagctgtttgcaccccctcaaggacgggcctg 10917194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 23606856 - 23606914
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggcc 437  Q
    ||||||||||  || ||||||||||| |||  |||||||||||||||||||| ||||||    
T  23606856 tgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggcc 23606914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 23798496 - 23798565
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 448  Q
    ||||||||||  || ||||||||||||||   |||||||||| ||||||||| | |||| ||||||||||    
T  23798496 tgaggcccatgactgagggaggcccagctttgttgagctgttcgcaccccctcaaggccaggcctgatta 23798565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 30883176 - 30883127
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccc 427  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||    
T  30883176 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccc 30883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 11081358 - 11081469
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatg 150  Q
    |||||||||||||| ||||||||||| ||  |||||||||  |||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||    
T  11081358 tattatgttttcatctgtaaatatataatcaaatatgttacagagaatttggctaaattgaagagatgatagatgaacttcaaatccataaaaaataatg 11081457  T
Q  151 tctaaatcaaag 162  Q
    || |||||||||    
T  11081458 tccaaatcaaag 11081469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 21307785 - 21307713
Alignment:
Q  91 aggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaagt 163  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  21307785 aggagaatttggctaaattgaagagaggatagatgaacctcaaatccataaaaaataatgtataaatcaaagt 21307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 11081683 - 11081746
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 441  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11081683 atgaggcccatgccttagggaggcctagctccattgagctgtttgcaccccctaagggccgggc 11081746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 17353824 - 17353755
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 448  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  17353824 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgatta 17353755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 19987031 - 19986966
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    |||||||||||  | |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19987031 tgaggcccataattgagggaggcccagctctgttgagctgtttgcacccccttagggccgggcctg 19986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 446
Target Start/End: Original strand, 20711953 - 20712020
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 446  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||| ||| |||||||||||||||    
T  20711953 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 30123878 - 30123957
Alignment:
Q  82 aatatgttaaggagaatttggctaaattgaagagaggattgatgaacctcaaatctataaaaaataatgtctaaatcaaa 161  Q
    ||||||||||||||||||||| | ||||| ||||||||| || || |||||||||||||| |||| ||||| ||| ||||    
T  30123878 aatatgttaaggagaatttggttgaattggagagaggatagacgagcctcaaatctataataaattatgtccaaaacaaa 30123957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 20611564 - 20611514
Alignment:
Q  384 cccataccttagggaggcccagctccattgagctgtttgcaccccctaagg 434  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  20611564 cccataccttagggaggcccagctccattgagctctttgcacaccccaagg 20611514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 27788923 - 27788984
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccggg 440  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||    
T  27788923 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccggg 27788984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 11574872 - 11574806
Alignment:
Q  57 gttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    ||||| |||||||||||||| ||  ||||||||||||||||||||| | ||||||| |||| |||||    
T  11574872 gtttttatttgtaaatatataatctaatatgttaaggagaatttggttgaattgaatagagtattga 11574806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 235475 - 235528
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatt 447  Q
    |||||||||||||||  || ||||||||||||||||| |||| |||||||||||    
T  235475 agggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgatt 235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 23070890 - 23070941
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 430  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  23070890 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 23070941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 13727649 - 13727706
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||   | |||||||||||||||  |||||||||||||||||||| ||||    
T  13727649 atgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 13727706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 19741239 - 19741280
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  19741239 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 19741280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 21280383 - 21280342
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  21280383 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 21280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 21479350 - 21479293
Alignment:
Q  378 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    ||||||||||| | | |||||||||||||||  || ||||||||||||||||| ||||    
T  21479350 atgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctcaggg 21479293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 27314780 - 27314821
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  27314780 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 27314821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 30832668 - 30832717
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 428  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  30832668 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 30832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 106444 - 106379
Alignment:
Q  379 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 444  Q
    ||||||||||  || |||||||||||||||  ||||||||||||||||| || |||||||||||||    
T  106444 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 4589 - 4531
Alignment:
Q  56 tgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaaga 114  Q
    |||||| |||||||||||||| || ||||||||||||||||||||| || | |||||||    
T  4589 tgtttttatttgtaaatatataatccaatatgttaaggagaatttgactgatttgaaga 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 4197 - 4135
Alignment:
Q  396 ggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgattacaatacaaca 458  Q
    |||||||||||||  ||||||||||||||||| || |||||||| |||||| |||| ||||||    
T  4197 ggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgataacaacacaaca 4135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 1061 - 1020
Alignment:
Q  394 agggaggcccagctccattgagctgtttgcaccccctaaggg 435  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  1061 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 50986 - 51058
Alignment:
Q  51 tattatgttttcatttgtaaatatatgattcaatatgttaaggagaatttggctaaattgaagagaggattga 123  Q
    |||| |||||| |||||||||||||| || |||| ||||| |||||||||| || ||||| | | ||||||||    
T  50986 tattttgtttttatttgtaaatatataatccaatttgttatggagaatttgcctgaattggaaaaaggattga 51058  T

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