View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_12 (Length: 527)
Name: NF19128_high_12
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 24949417 - 24949908
Alignment:
| Q |
19 |
cagcgtcttgaccaggtcgatcagcgctcggagttttaaaacacatgttcatcccaacatagattccactaaggaggtaaatgcatgataacttctagat |
118 |
Q |
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| T |
24949417 |
cagcgtcttgaccagatcgatcaccgatccgagttttaaaacacatgttcatcccaacatagattccactaaggaggtaaatgcatgataacttctagat |
24949516 |
T |
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| Q |
119 |
tgaagttaatgaaatgcttattagtactttcccaaattaaaattcacatacatgggctattttggccgatgtaatgaaacttgaatctagtaaacaacta |
218 |
Q |
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| T |
24949517 |
tgaagttaatgaaatgcttattagtactttcccaaattaaaattcacatacatgggctattttggccgatgtaatgaaacttgaatctagtaaacaacta |
24949616 |
T |
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| Q |
219 |
acctttcaacaatttgtaatcaatacttagcaaagaaaattataagttaatatacaatgagaatctaaacctaactattcatctagataaccataagaaa |
318 |
Q |
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| T |
24949617 |
acctttcaacaatttgtaatcaatacttagcaaagaaaattataagttaatatacaatgagaatctaaacctaactattcatctagataaccataagaaa |
24949716 |
T |
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| Q |
319 |
tggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatacttcattattttgcataacct |
418 |
Q |
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| T |
24949717 |
tggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatacttcattactttgcataacct |
24949816 |
T |
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| Q |
419 |
gcagtatattgaggagatagctataatgatatacagaatcagagtgaaaaatgaaatttaaaatcaaaagagaatggtaaatgagttttaag |
510 |
Q |
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| T |
24949817 |
gcagtatattgaggagatagctataatgatatacagaatcagagagaaaaatgaaatttaaaatcaaaagagaatggtaaatgagttttaag |
24949908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 65 - 398
Target Start/End: Original strand, 24366476 - 24366802
Alignment:
| Q |
65 |
gttcatcccaacatagattccactaaggaggtaaatgcatgataacttctagattgaagttaatgaaatgcttattagtactttcccaaattaaaattca |
164 |
Q |
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|||||||||||||||| | |||||||||||||||||||| |||||||||| |||| ||||||||||||||| || |||| || |||||||||| ||||| |
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| T |
24366476 |
gttcatcccaacatagctcccactaaggaggtaaatgcagaataacttctacattggagttaatgaaatgctaataagtaattccccaaattaatattca |
24366575 |
T |
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| Q |
165 |
catacatgggctattttggccgatgtaatgaaacttgaatctagtaaacaactaacctttcaacaatttgtaatcaatacttagcaaagaaaattataa- |
263 |
Q |
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| T |
24366576 |
catacagggaatattctaaccaatgtaatgaaacttgaatctagtaaaaaactaccctttcaacaatttgtaaccactacttaacaacaaaaattataag |
24366675 |
T |
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| Q |
264 |
gttaatatacaatgagaatctaaacctaactattcatc---tagataaccataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaa |
360 |
Q |
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| T |
24366676 |
ggtaatatacattgagatcctaaacctaactattcatctagtagataaccacaagaaatggtttc-----------aggcctgaatatgagcagtgtcga |
24366764 |
T |
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| Q |
361 |
ttactgcattaactaagaactaactaattacatgatac |
398 |
Q |
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| T |
24366765 |
ttactgcattaactaataactacctaattacatgatac |
24366802 |
T |
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