View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_high_14 (Length: 507)

Name: NF19128_high_14
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_high_14
NF19128_high_14
[»] chr1 (3 HSPs)
chr1 (34-496)||(18786939-18787402)
chr1 (333-365)||(27905427-27905459)
chr1 (204-308)||(36790063-36790167)
[»] chr2 (1 HSPs)
chr2 (229-308)||(31122773-31122852)
[»] chr3 (2 HSPs)
chr3 (336-365)||(9584090-9584119)
chr3 (336-365)||(33143986-33144015)
[»] chr8 (1 HSPs)
chr8 (336-368)||(17657039-17657071)
[»] chr5 (1 HSPs)
chr5 (306-365)||(28765609-28765668)
[»] chr4 (1 HSPs)
chr4 (306-357)||(39041281-39041332)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 34 - 496
Target Start/End: Original strand, 18786939 - 18787402
Alignment:
Q  34 taaccaccgaaatcaaagtcaacacctaaatcaaaaccaaacccccaaataatcgtcgaaatcaaacttgagcgaaaatcacaaacgacattgtgaatgg 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| || |||||||||||    
T  18786939 taaccaccgaaatcaaagtcaacacctaaatcaaaaccaaacccctaaataatcgtcgaaaccaaacttcagcgaaaatcacaaaggatattgtgaatgg 18787038  T
Q  134 ccacatgcacaaattctaaaccgttgtcacccgctactcacaaaaatttctatnnnnnnnccatcaaactaatcaaaaccctgtgagcagaaacccatct 233  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||||||||       ||||||||| ||||||||||||| ||||||| ||||||||    
T  18787039 ccacatgcacaaattccaaaccgttgtcatccggtactcacaaaaatttctataaaaaaaccatcaaaccaatcaaaaccctgcgagcagatacccatct 18787138  T
Q  234 tctcatcactatagctaagtccaattaaacacccgaaaatgtcttattccaccactcattcagattccactaccaaaaacttgagtctagaaaacagact 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18787139 tctcatcactatagctaagtccaattaaacacccgaaaatgtcttattccaccactcatttagattccactaccaaaaatttgagtctagaaaacagact 18787238  T
Q  334 ctgatctcgaatcaaaagtgatcgatccaccatacgcgaaatcactaagacactccttaatttctggtccatcagggaagacaccataatcaaccgaaaa 433  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18787239 ctgatctcgaatcaaaagtgatcggtccaccatacgcgaaatcactaaaacactccttagtttctggtccatcagagaagacaccataatcaaccgaaaa 18787338  T
Q  434 aacatgaatctggacactaattctcgatctcaaagtaaaagcg-ttatctcaacaaaatacaag 496  Q
    |||||||| || ||||||||||||||||||| ||||||||||| | | ||||||||||| ||||    
T  18787339 aacatgaaactagacactaattctcgatctcgaagtaaaagcgatcaactcaacaaaatccaag 18787402  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 27905459 - 27905427
Alignment:
Q  333 tctgatctcgaatcaaaagtgatcgatccacca 365  Q
    ||||||||||||||||||||||||| |||||||    
T  27905459 tctgatctcgaatcaaaagtgatcggtccacca 27905427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 308
Target Start/End: Complemental strand, 36790167 - 36790063
Alignment:
Q  204 aatcaaaaccctgtgagcagaaacccatcttctcatcactatagctaagtccaattaaacacccgaaaatgtcttattccaccactcattcagattccac 303  Q
    |||||||||||||  ||||||    ||||||| ||||| ||||||| |||||||||||||||  ||||||  | ||||| | ||||| |||| |||||||    
T  36790167 aatcaaaaccctggaagcagaccatcatcttcccatcaatatagctgagtccaattaaacacgtgaaaatcacatattcaaacactccttcaaattccac 36790068  T
Q  304 tacca 308  Q
     ||||    
T  36790067 cacca 36790063  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 31122773 - 31122852
Alignment:
Q  229 catcttctcatcactatagctaagtccaattaaacacccgaaaatgtcttattccaccactcattcagattccactacca 308  Q
    ||||||||| |||| ||| |||||| ||||||| ||| |||||||| | |||||||| ||| ||||||||||||| ||||    
T  31122773 catcttctcgtcaccatatctaagttcaattaagcactcgaaaatgacatattccacaactaattcagattccaccacca 31122852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 9584090 - 9584119
Alignment:
Q  336 gatctcgaatcaaaagtgatcgatccacca 365  Q
    ||||||||||||||||||||||||||||||    
T  9584090 gatctcgaatcaaaagtgatcgatccacca 9584119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 33143986 - 33144015
Alignment:
Q  336 gatctcgaatcaaaagtgatcgatccacca 365  Q
    ||||||||||||||||||||||||||||||    
T  33143986 gatctcgaatcaaaagtgatcgatccacca 33144015  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 368
Target Start/End: Original strand, 17657039 - 17657071
Alignment:
Q  336 gatctcgaatcaaaagtgatcgatccaccatac 368  Q
    ||||||||||||||||||||||| |||||||||    
T  17657039 gatctcgaatcaaaagtgatcgacccaccatac 17657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 28765609 - 28765668
Alignment:
Q  306 ccaaaaacttgagtctagaaaacagactct-gatctcgaatcaaaagtgatcgatccacca 365  Q
    |||||||||| |||| ||||| | |||||| ||||||||||||||||||||| ||||||||    
T  28765609 ccaaaaacttaagtcaagaaa-ctgactctcgatctcgaatcaaaagtgatcaatccacca 28765668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 39041281 - 39041332
Alignment:
Q  306 ccaaaaacttgagtctagaaaacagactc-tgatctcgaatcaaaagtgatcg 357  Q
    |||| |||||||||||||||| | ||||| |||||||||||||||||||||||    
T  39041281 ccaacaacttgagtctagaaa-ctgactcctgatctcgaatcaaaagtgatcg 39041332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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