View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_18 (Length: 456)
Name: NF19128_high_18
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 449
Target Start/End: Original strand, 27145787 - 27146000
Alignment:
| Q |
224 |
cacaagaaagtacatcagttgtagtggtagcattgactgactattaagtacaatcccacaccaagatataaatcacgttaaaaactttatcaactaaaga |
323 |
Q |
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| T |
27145787 |
cacaagaaagtacatcagttgtagtggtagcattgactgactattaagtacaatcccacaccaagatataaatcacgttaaaaactttatcaactataga |
27145886 |
T |
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| Q |
324 |
aagacattaaaatattaaagaatacaagtcacaattgtgtgggtatagtgtttttctataatcatatagctacgaaaaactaatttatgatgaaacttgt |
423 |
Q |
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| T |
27145887 |
aagacatgaaaatattaaagaatacaagtcacaattgtgtgggtat------------taatcatataggtacgaaaaactaatttatgatgaaacttgt |
27145974 |
T |
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| Q |
424 |
taaactcataagattgatattcttgg |
449 |
Q |
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| T |
27145975 |
taaactcataagattgattttcttgg |
27146000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 27145560 - 27145746
Alignment:
| Q |
34 |
atagttaatgaaatctgaggacttactgagtaaacttgttagcaagacaaaaaataaaataacaccatttaggtaggtgaaatatggtgtttataaaacg |
133 |
Q |
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| T |
27145560 |
atagttaatgaaatttgaggacttatttaggaaacttgttagcgagacaaaaaataaaataacaccctttcggtaggtgaaaaatggggtttataaaaag |
27145659 |
T |
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| Q |
134 |
tgtacgttttggtatagattggatatgctccagtgtttacctacta-ttttgcacttcttgtatctttttatgatcaaatagtccaa |
219 |
Q |
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| T |
27145660 |
tgatggttggggtatatatttgatttgctacagtgtttacctactatttttgcacttcttgtctctttttatgatcaaatagtccaa |
27145746 |
T |
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