View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_21 (Length: 420)
Name: NF19128_high_21
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 40140718 - 40141110
Alignment:
| Q |
11 |
ttattcttaacaaacaataaagtttatgacaagtcagtaactctttatcactaaaatagtgcagtagctaggttcttaaatttgtttcagaaatgtcatc |
110 |
Q |
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| T |
40140718 |
ttattcttaacaaacaataaagtttatgacaagtcagtaactctttatcactaaaatagtgcagtagctaggttcttaaatttgtttcagaaatgtgatc |
40140817 |
T |
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| Q |
111 |
ttaagttcttaataagcatgaggaacaccacctcaattacttttctagtttcaggattttcaatctataatttaaa--agaggtttttctttaaattata |
208 |
Q |
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| T |
40140818 |
ttaagttcttaataagcatgaggaacaccgcctcaattacttttctagtttcaggattgtcaatctataatttaaaatagaggtttttctttaaattata |
40140917 |
T |
|
| Q |
209 |
gccagtgaaaccaattnnnnnnngagactgtagtcaagaaccatgtgagtaagactaaaatataacttacaaaaattcagctgatacattgtccttgttc |
308 |
Q |
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| T |
40140918 |
gccagtgaaaccaattaaaaaaagagactatagtcaagaaccatgtgagtaagactaaaatataacttacaaaaattcagctgatacattgtccttgttc |
40141017 |
T |
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| Q |
309 |
acaccaggaggaagtggccaaacaacctcatatggtccatacagtatctctcgcttgtgatatgaagaaactgaagcatttgggcaacctgct |
401 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40141018 |
acaccatgaggaagtggccaaacaacctcatatggtccatacagtatctctcgcttgtgatatgaagaaactgaagcatttgggcaacctgct |
40141110 |
T |
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