View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_28 (Length: 383)
Name: NF19128_high_28
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 121 - 366
Target Start/End: Original strand, 52970528 - 52970773
Alignment:
| Q |
121 |
taatacattttcctctgagactgaactagtgaaatataggtcacgttttatcataataaggaagtatgcaatttattcaatatcacatcctataaaatat |
220 |
Q |
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| T |
52970528 |
taatacattttcctctgagactgaacaagtgaaatataggtcacgttttattataataaggaagtatgcaatttattctatatcacatcctataaaatat |
52970627 |
T |
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| Q |
221 |
gctacaaaccttgacttgtgatcctacatataactgattatctagtagtggaatctttaggaagaaatcacatatatagtctagtattcccagcaaaaca |
320 |
Q |
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| T |
52970628 |
gctacaaaccttgacttgtgatcctacatataactgattatctagtagtggaatctttaggaagaaaccacatatatagtctagtattcccagcaaaaca |
52970727 |
T |
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| Q |
321 |
atattataaaagctgtttgatcatgagaccgtgctacttatcaaag |
366 |
Q |
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| T |
52970728 |
atattataaaagctgtttgatcatgagacagtgctacttatcaaag |
52970773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 28930967 - 28931010
Alignment:
| Q |
4 |
gaaattaaagacaaataaggaaatataatataaattatcatata |
47 |
Q |
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| T |
28930967 |
gaaattaaagacaaataatgaaatataatataaattatcatata |
28931010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 24546920 - 24546964
Alignment:
| Q |
4 |
gaaattaaagacaaataaggaaatataatataaattatcatatat |
48 |
Q |
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| T |
24546920 |
gaaattaaagaaaaataaggaaatataatagaaattatcatatat |
24546964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 29822609 - 29822652
Alignment:
| Q |
4 |
gaaattaaagacaaataaggaaatataatataaattatcatata |
47 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29822609 |
gaaattaaagacaaataagtaaatataatataaattatcatata |
29822652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 9769359 - 9769412
Alignment:
| Q |
4 |
gaaattaaagacaaataaggaaatataatataaattatcatatattgtgagtca |
57 |
Q |
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|||||| |||| |||||| |||| ||||||||||||||||||| |||||||||| |
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| T |
9769359 |
gaaattcaagataaataaagaaagataatataaattatcatatgttgtgagtca |
9769412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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