View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_high_29 (Length: 380)
Name: NF19128_high_29
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_29 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 33621321 - 33621700
Alignment:
| Q |
1 |
gttgtaaccaactaagaattatctctctgcatcatttgaaaccatgacactgcatccttctcattgtgcaccgtggcaatggtgagcatttcatgttgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33621321 |
gttgtaaccaactaagaattatctctctgcatcatttgaaaccatgacactgcatccttctcattgtgcaccgtggcaatggtgagcatttcgtgttgca |
33621420 |
T |
|
| Q |
101 |
taatatgcaaaaattgctctaatttgaatatctacttcaacatattggtaccatctaaacgtggaaagtcaaattttatgtttctgacttgaaagtgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33621421 |
taatatgcaaaaattgctctaatttgaagatctacttcaacatattggtaccatctaaacgtggaaagtcaaattttatgtttctgacttgaaagtgttg |
33621520 |
T |
|
| Q |
201 |
gctactaccggaaaattgggataagctaaaccacctgaaagggtgagacgaactgcattgatcccagcagatctaactctcttggtaagatacaggacgt |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
33621521 |
gctactaccggaagattgggataagctaaaccacctgaaagggtgtgacgaactgcattgatcccagcagatctaaccctctttgtaagatacaggatgt |
33621620 |
T |
|
| Q |
301 |
cgttatgatagtcactgccatgaatacatgagttatctcttatctgccatggttaatgcaacaaggtactcaaatgattc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33621621 |
cgttatgatagtcactgccatgaatacatgagttatctcttatctgccatagttaatgcaacaaggtactcaaatgattc |
33621700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University