View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_30 (Length: 363)
Name: NF19128_high_30
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_30 |
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| [»] scaffold0058 (1 HSPs) |
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Alignment Details
Target: scaffold0058 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0058
Description:
Target: scaffold0058; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 2439 - 2773
Alignment:
| Q |
18 |
atatctagcgtttgagatgcttgattttgttccatcctttcttgaatgaatttccaacagtatggattcccttcttgaaaaatctctccacctccttggc |
117 |
Q |
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| T |
2439 |
atatctagcgtttgagatgcttgattttgttccatcctttcttgaatgaatttccaacagtatggattcccttcttgaaaaatctctccacctccttggc |
2538 |
T |
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| Q |
118 |
tctgtacttcacctgtcgttcaaatccacccatagtnnnnnnnnnnnntatggtttaggtgaagaaagagagataactaacaacaacttagtactagaat |
217 |
Q |
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| T |
2539 |
tctgtacttcacctgtcgttcaaatccacccatagtgagagagagagatatggtttaggtgaagaaagagagataactaacaacaacttagtactagaat |
2638 |
T |
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| Q |
218 |
aaaacaatagagaaagaaacctatttattaaattaaacaaggaaaggagtagtgggatccaacgcatcacaggacacgtggaattgataagtggatgcca |
317 |
Q |
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| T |
2639 |
aaaacaatagagaaagaaacctatttattaaattaaacaaggaaaggagtagtgggatccaacgcatcacaggacacgtggaattgataagtggatgcca |
2738 |
T |
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| Q |
318 |
tggccttaaacttaaatctgagtcgtttgtttcat |
352 |
Q |
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| T |
2739 |
tggccttaaacttaaatctgagtcgtttgtttcat |
2773 |
T |
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