View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_high_31 (Length: 359)
Name: NF19128_high_31
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_31 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold1004 (1 HSPs) |
| | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 33026701 - 33027018
Alignment:
| Q |
7 |
tagattatactgtgttcctcacatggaaaatcggggtttgttgtgtaactatacaagggttttatatatttctgaggatgaaaaattgttgatcgacttt |
106 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
33026701 |
tagattgtaccgtgttcctcacatggacaatcggggtttgttgtgtaactatacaagggttttatatatttctgaggatgaaatattgttgatggacttt |
33026800 |
T |
|
| Q |
107 |
ggaaagttggaatgttaccaatcgaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33026801 |
ggaaagttggaatgttaccaatcgaagttggttgtttacgattccaaagatggtactttggagattcctacgattcaaaacattggtggttggatccacc |
33026900 |
T |
|
| Q |
207 |
cagaagtctacattgaaagtctgatatcaccttgttcttaatgtcaggatatagatgctatgtcaggatatatatggctaatttttgtttatgttatttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
33026901 |
cagaagtctacattgaaagtctgatatcaccttgttcttaatgtca-------------------ggatatatatggataatttttgtttatgttatttg |
33026981 |
T |
|
| Q |
307 |
ttttgtc-agtctaataactagtgagtagtgacttgt |
342 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33026982 |
ttttgtctagtctaataactagtgagtagtgacttgt |
33027018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 33020357 - 33020613
Alignment:
| Q |
7 |
tagattatactgtgttcctcacatggaaaatcggggtttgttgtgtaactatacaagggttttatatatttctgaggatgaaaaattgttgatcgacttt |
106 |
Q |
| |
|
|||||| ||| |||||||| |||||||| |||||||||||| || ||||||||| || |||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
33020357 |
tagattgtaccgtgttccttacatggaagatcggggtttgt---gtcactatacaaaggctttatatatttctgaggatgaacaattgctgatggacttt |
33020453 |
T |
|
| Q |
107 |
ggaaagttggaatgttaccaatcgaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttg-gatccac |
205 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
33020454 |
aaggagttggaaagtggtaaattgaagttggttgtttacgattccaaagatggtactttgaagattcctgagattcaaaacattggtggttgagatggaa |
33020553 |
T |
|
| Q |
206 |
ccagaagtctacattgaaagtctgatatcaccttgttcttaatgtcaggatatagatgctatg |
268 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
33020554 |
ccaaaagtctacattgaaagt---atatcaccttgttcttaatgttaggatgtagatggtatg |
33020613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 33038356 - 33038494
Alignment:
| Q |
130 |
gaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctg |
229 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33038356 |
gaagttgtttgtttacgattccaatgatggtactttggagattcctgagattcaaaacattggtggttggatggacccagaagtctacattgaaagtctg |
33038455 |
T |
|
| Q |
230 |
atatcaccttgttcttaatgtcaggatatagatgctatg |
268 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33038456 |
atatcaccttgttcttaatgttaggatgtagatgctatg |
33038494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 33038204 - 33038300
Alignment:
| Q |
7 |
tagattatactgtgttcctcacatggaaaatcggggtttgttgtgtaactatacaagggttttatatatttctgaggatgaaaaattgttgatcgacttt |
106 |
Q |
| |
|
|||||| ||| |||||||| |||||||| |||||||||||| || |||||||| || |||||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
33038204 |
tagattgtaccgtgttccttacatggaagatcggggtttgt---gtcgctatacaaaggctttatatatttctgaggatgaacaattgctgatggacttt |
33038300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 34570363 - 34570232
Alignment:
| Q |
131 |
aagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctga |
230 |
Q |
| |
|
||||| |||||||||| || || | || ||| |||| ||||||||| |||||||||||| | ||||||| ||| |||||| |||||||| ||| | | |
|
|
| T |
34570363 |
aagttagttgtttacgtttttagaaattgtattttgaagattcctgagattcaaaacatccattgttggatggaccgagaagtatacattgagagtttca |
34570264 |
T |
|
| Q |
231 |
tatcaccttgttcttaatgtcaggatatagat |
262 |
Q |
| |
|
||| ||||| || ||||||| ||||| ||||| |
|
|
| T |
34570263 |
tataaccttatttttaatgttaggatgtagat |
34570232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 89311 - 89440
Alignment:
| Q |
134 |
ttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctgatat |
233 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||||| | || |||| ||||| ||||||||||||| ||| |||||| |
|
|
| T |
89311 |
ttggttgtttatgattcaaaaaatggtactttgaagattcctgtgattcaaaacatcaatcgtcggatggacccaaaagtctacattgagagtttgatat |
89410 |
T |
|
| Q |
234 |
caccttgttcttaatgtcaggatatagatg |
263 |
Q |
| |
|
|||||||||||||| || ||||| |||||| |
|
|
| T |
89411 |
caccttgttcttaacgttaggatgtagatg |
89440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 24417447 - 24417242
Alignment:
| Q |
56 |
tatacaagggttttatatatttctgaggatgaaaaattgttgatcgactttggaaagttggaatgttaccaatcgaagttggttgtttacgattctaaag |
155 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| || || |||| | |||| |||||||| ||||| ||| |||||||||||||||| |||| ||| |
|
|
| T |
24417447 |
tatacaaaggctttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacaattccaaaa |
24417348 |
T |
|
| Q |
156 |
atggtactttggagattcctgcgattcaaaacattggtggttggatcca------cccagaagtctacattgaaagtctgatatcaccttgttcttaatg |
249 |
Q |
| |
|
|||||| ||| ||||||||| |||| |||||| | |||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24417347 |
atggtatcttgaagattcctgagattggaaacatccggcgttgcttgcagctggacccagaagtctacattgaaagtctgatatcaccttgttcttaatg |
24417248 |
T |
|
| Q |
250 |
tcagga |
255 |
Q |
| |
|
| |||| |
|
|
| T |
24417247 |
ttagga |
24417242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 43992127 - 43992244
Alignment:
| Q |
133 |
gttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctgata |
232 |
Q |
| |
|
||||| |||||||||||| ||| |||||||| || ||||||||| ||||||||||| ||||||||| |||| ||||| ||| |||| ||| ||||| |
|
|
| T |
43992127 |
gttggctgtttacgattccaaaaatggtactctgaagattcctgagattcaaaacaccaatggttggatagaccctgaagtttacgttgagagtttgata |
43992226 |
T |
|
| Q |
233 |
tcaccttgttcttaatgt |
250 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
43992227 |
tcaccttgttcttaatgt |
43992244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 7942649 - 7942787
Alignment:
| Q |
130 |
gaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctg |
229 |
Q |
| |
|
||||||||||||||||||||| ||| | | ||||||| |||||| || |||||||||||| | | ||||| | || |||||||||||| | ||| || |
|
|
| T |
7942649 |
gaagttggttgtttacgattccaaaaacgatactttgaagattcatgagattcaaaacatcaatagatggatgaatcctgaagtctacattaagagtttg |
7942748 |
T |
|
| Q |
230 |
atatcaccttgttcttaatgtcaggatatagatgctatg |
268 |
Q |
| |
|
||||||||||| ||||||||| ||| | | ||||||||| |
|
|
| T |
7942749 |
atatcaccttgctcttaatgttagggtttggatgctatg |
7942787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 2456413 - 2456533
Alignment:
| Q |
130 |
gaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctg |
229 |
Q |
| |
|
|||||| ||||||||| |||| ||| |||||||||| || ||||| |||||||||||| | | || ||| ||||||||||||||||||| ||| | |
|
|
| T |
2456413 |
gaagttagttgtttacaattccaaaagtggtactttgaagtttcctaagattcaaaacatcgattatttgatggacccagaagtctacattgagagtgtt |
2456512 |
T |
|
| Q |
230 |
atatcaccttgttcttaatgt |
250 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
2456513 |
atatcaccttgttctaaatgt |
2456533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 771383 - 771269
Alignment:
| Q |
130 |
gaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaacattggtggttggatccacccagaagtctacattgaaagtctg |
229 |
Q |
| |
|
|||||| ||||||||| |||| ||| |||||||||| || ||||| |||||||||||| | | || ||| |||||||||||||||| || ||| || |
|
|
| T |
771383 |
gaagttagttgtttacaattccaaaagtggtactttgaagtttcctaagattcaaaacatcgattatttgatggacccagaagtctacatagagagtttg |
771284 |
T |
|
| Q |
230 |
atatcaccttgttct |
244 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
771283 |
atatcaccttgttct |
771269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 783636 - 783572
Alignment:
| Q |
204 |
acccagaagtctacattgaaagtctgatatcaccttgttcttaatgtcaggatatagatgctatg |
268 |
Q |
| |
|
|||| ||||||||| |||| ||| ||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
783636 |
acccggaagtctacgttgagagtttgatatcaccttgttcttaatgtcaagatgttgatgctatg |
783572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 1438225 - 1438287
Alignment:
| Q |
206 |
ccagaagtctacattgaaagtctgatatcaccttgttcttaatgtcaggatatagatgctatg |
268 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||| ||||||||| ||| | ||||||||| |
|
|
| T |
1438225 |
ccagaagtctacgttgagagtttgatatcaccttgtttttaatgtcaagatgttgatgctatg |
1438287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 37753158 - 37753116
Alignment:
| Q |
210 |
aagtctacattgaaagtctgatatcaccttgttcttaatgtca |
252 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
37753158 |
aagtctacactgagagtctgatatcaccttgttcttaatgtca |
37753116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 37752802 - 37752754
Alignment:
| Q |
218 |
attgaaagtctgatatcaccttgttcttaatgtcaggatatagatgctat |
267 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
37752802 |
attgaaagtctgatatcac-ttgttcttaatgttaagatatagatgctat |
37752754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 9561875 - 9561817
Alignment:
| Q |
130 |
gaagttggttgtttacgattctaaagatggtactttggagattcctgcgattcaaaaca |
188 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||| | ||||||||| |
|
|
| T |
9561875 |
gaagttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaaca |
9561817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 9586995 - 9586930
Alignment:
| Q |
204 |
acccagaagtctacattgaaagtctgatatcaccttgttcttaatgtcaggatatagatgctatgt |
269 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||| ||||| |||||| | | | |||||||||| |
|
|
| T |
9586995 |
acccggaagtctacattgagagtttgatatcaccttattcttgatgtcaagttgttgatgctatgt |
9586930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 956612 - 956652
Alignment:
| Q |
209 |
gaagtctacattgaaagtctgatatcaccttgttcttaatg |
249 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
956612 |
gaagtctgctttgaaagtttgatatcaccttgttcttaatg |
956652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 37757525 - 37757485
Alignment:
| Q |
231 |
tatcaccttgttcttaatgtcaggatatagatgctatgtca |
271 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||| |
|
|
| T |
37757525 |
tatcaccttgttcttaatgtcaaggtgtagatgctatgtca |
37757485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 2374 - 2418
Alignment:
| Q |
206 |
ccagaagtctacattgaaagtctgatatcaccttgttcttaatgt |
250 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
2374 |
ccagaagtctacattgagagtctaatatcaccttgtttttaatgt |
2418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 4869 - 4913
Alignment:
| Q |
206 |
ccagaagtctacattgaaagtctgatatcaccttgttcttaatgt |
250 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
4869 |
ccagaagtctacattgagagtctaatatcaccttgtttttaatgt |
4913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 23644651 - 23644693
Alignment:
| Q |
208 |
agaagtctacattgaaagtctgatatcaccttgttcttaatgt |
250 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
23644651 |
agaagtctgcgttgaaagtttgatatcaccttgttcttaatgt |
23644693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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