View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_33 (Length: 347)
Name: NF19128_high_33
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 506469 - 506152
Alignment:
| Q |
12 |
atgaatgaggttacttcacatcaaaacatcacttgtctgagagtcttgtaatggtcccagaatcacttaaacctctacaaaaaccccacttaaaagaaga |
111 |
Q |
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| T |
506469 |
atgaatgaggttacttcacatcaaaacatcacttgtctgagagtcttgtaatggtcccagaatcacttaaacctctacaaaaaccccacttaaaagaaga |
506370 |
T |
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| Q |
112 |
ctctttcatagggatcagagttctgaatctgatatgaaaagtatatggcagttgattgatacaacaaactgttgtccaaacctaataacacctttagtat |
211 |
Q |
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| T |
506369 |
ctctttcagagggatcagagttctgaatctgatatgaaaagtatatggcagttgattgatacaacaaactgttctccaaacctaataacacctttagtat |
506270 |
T |
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| Q |
212 |
aatacacacactggttaggaccacaattcttgttgggctactgtatctgttccaaatcagttgtttcattagtcacaaccgaaatccagctcatgcggcc |
311 |
Q |
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| T |
506269 |
aatacacacactggttaggaccacaattcttgttgggctactgcatctgttccaaatcaattgtttcattagtcacaaccgaaatccagctcatgtggcc |
506170 |
T |
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| Q |
312 |
attattaagttttttata |
329 |
Q |
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|||||||||||||||||| |
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| T |
506169 |
attattaagttttttata |
506152 |
T |
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