View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_35 (Length: 337)
Name: NF19128_high_35
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 28726982 - 28727284
Alignment:
| Q |
16 |
atacagctgataactaaccaacgataggctaacagaataaccgacataattgtataataaacagacagttatcagttaatatctcatacttatagtggat |
115 |
Q |
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| T |
28726982 |
atacagctgataactaaccaacgataggctaacagaataaccgacataattgtataataaacagacagttatcagttaatatctcatacttatagtggat |
28727081 |
T |
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| Q |
116 |
atgtagtcaaagaaaagatcaagaaacttacaggtaaagaaagatcaagaaccggtttttagatatccaagatataaaaacgccacctgtttaacattaa |
215 |
Q |
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| T |
28727082 |
atgtagtcaaagcaaagatcaagaaacttataggtaaagaaagatcaagaaccggtttttagatatccaagatataaaaacgccacctgtttaacattaa |
28727181 |
T |
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| Q |
216 |
ctaaccatatgtatataaaagctatgatatcaatggcaatataatcaacgtcaactaccaaaatctccaaaatagaattgctaccaggaaaagagtttca |
315 |
Q |
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| T |
28727182 |
ctaaccatatgtatataacagctatgatatcaatggcaatataatcaacgtcaacaaccaaaatctctaaaatagaattgctaccaggaaaagagtttca |
28727281 |
T |
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| Q |
316 |
agg |
318 |
Q |
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||| |
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| T |
28727282 |
agg |
28727284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 28724655 - 28724751
Alignment:
| Q |
225 |
tgtatataaaagctatgat---atcaatggcaatataatcaacgtcaactaccaaaatctccaaaatagaattgctaccaggaaaagagtttcaagg |
318 |
Q |
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|||||||||||||||| || ||| ||||||||| |||||| ||| |||||||||| ||| ||| ||||||||||| ||||||| |||||||||| |
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| T |
28724655 |
tgtatataaaagctataatcatatccatggcaatacaatcaatgtctactaccaaaaactctaaattagaattgctaggaggaaaacagtttcaagg |
28724751 |
T |
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