View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_38 (Length: 331)
Name: NF19128_high_38
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 308
Target Start/End: Complemental strand, 46897829 - 46897523
Alignment:
| Q |
2 |
ttttcaaaagttgttaattgaatttttgcaacatgtagaatggttggatcagaattctaatggtttgaaggccttcaagttatcactaactcttgcatca |
101 |
Q |
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| T |
46897829 |
ttttcaaaagttgttacttcaatttttgcaacatgtagaatggttggatcagaattctaatggtttgaaggtcttcaagttatcactaactcttgcatca |
46897730 |
T |
|
| Q |
102 |
tctccaatgcatctcttacctttgcattatcaccattgagtccagtactttcaagaatgcatcgctgacttttgcatgagcaccattaagtccagtactt |
201 |
Q |
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| T |
46897729 |
tctccaatgcatctcttacctttgcattatcaccattgagtccagtactttcaagaatgcatcgctgacttttgcatgagcaccattaagtccaaaactt |
46897630 |
T |
|
| Q |
202 |
tcgacaagaagaagttagtgaagttagcgataacattacaaacatgggtttagatcttcacgaggagtttaagttaaatgactgagccgctagtggaagg |
301 |
Q |
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| T |
46897629 |
tcgacaagaagaagttagtgaagttagcgataacattacaaacatgggtttagatcttcacgaggagtgtaaattaaatgactgagccgctagtggaagg |
46897530 |
T |
|
| Q |
302 |
taaataa |
308 |
Q |
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||||||| |
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| T |
46897529 |
taaataa |
46897523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 41830065 - 41829940
Alignment:
| Q |
64 |
gtttgaaggccttcaagttatcactaactcttgcatcatctccaatgcatctcttacctttgcattatcaccattgagtccagtactttcaagaatgcat |
163 |
Q |
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| T |
41830065 |
gtttgaaggtcttccagttgtcactaactcttgcatcatctccaatgcatcactgacctttgcatgagcaccattaagtccagtacgttcaagaatgcat |
41829966 |
T |
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| Q |
164 |
cgctgacttttgcatgagcaccatta |
189 |
Q |
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| T |
41829965 |
cactgacttttgcatgagcaccatta |
41829940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 41812368 - 41812248
Alignment:
| Q |
74 |
cttcaagttatcactaactcttgcatcatctccaatgcatctcttacctttgcattatcaccattgagtccagtactttcaagaatgcatcgctgacttt |
173 |
Q |
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||||||||| || ||||||| |||||||| ||||||| | || |||||||||| | ||||||| |||||||| | || ||| ||||||| |||||||| |
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| T |
41812368 |
cttcaagttgtcgctaactcatgcatcatgtccaatgtgttactgacctttgcatgagcaccattaagtccagtgcgttgaagtatgcatcactgacttt |
41812269 |
T |
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| Q |
174 |
tgcatgagcaccattaagtcc |
194 |
Q |
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|||||||||||| |||||||| |
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| T |
41812268 |
tgcatgagcaccgttaagtcc |
41812248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 41830022 - 41829980
Alignment:
| Q |
157 |
aatgcatcgctgacttttgcatgagcaccattaagtccagtac |
199 |
Q |
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| T |
41830022 |
aatgcatcactgacctttgcatgagcaccattaagtccagtac |
41829980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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