View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_high_4 (Length: 670)

Name: NF19128_high_4
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_high_4
NF19128_high_4
[»] chr6 (8 HSPs)
chr6 (153-655)||(7978132-7978634)
chr6 (493-655)||(8042352-8042514)
chr6 (500-655)||(8032455-8032610)
chr6 (493-655)||(7971199-7971361)
chr6 (59-123)||(9402514-9402578)
chr6 (144-183)||(29199903-29199942)
chr6 (129-186)||(34178344-34178401)
chr6 (63-115)||(10925550-10925602)
[»] scaffold0531 (1 HSPs)
scaffold0531 (500-655)||(2497-2652)
[»] chr2 (14 HSPs)
chr2 (533-633)||(43854450-43854550)
chr2 (493-655)||(41381636-41381798)
chr2 (59-123)||(13531875-13531939)
chr2 (59-123)||(25210303-25210367)
chr2 (59-123)||(34544410-34544474)
chr2 (59-130)||(17845485-17845555)
chr2 (136-191)||(44057907-44057962)
chr2 (59-121)||(29656836-29656898)
chr2 (59-136)||(30696850-30696925)
chr2 (60-123)||(13954672-13954735)
chr2 (60-123)||(14095879-14095942)
chr2 (129-192)||(43371570-43371633)
chr2 (136-192)||(3547190-3547246)
chr2 (73-121)||(42995773-42995821)
[»] chr7 (13 HSPs)
chr7 (494-632)||(14198106-14198244)
chr7 (60-123)||(11472811-11472874)
chr7 (135-192)||(42908050-42908107)
chr7 (144-183)||(10990879-10990918)
chr7 (144-192)||(18684010-18684058)
chr7 (132-192)||(37103136-37103196)
chr7 (136-183)||(22973416-22973463)
chr7 (136-191)||(32546220-32546275)
chr7 (159-192)||(29014961-29014994)
chr7 (136-192)||(12980405-12980461)
chr7 (136-192)||(26622979-26623035)
chr7 (154-186)||(28309538-28309570)
chr7 (136-192)||(45380135-45380191)
[»] chr8 (13 HSPs)
chr8 (59-121)||(17108301-17108363)
chr8 (59-140)||(29918532-29918611)
chr8 (59-121)||(5793510-5793572)
chr8 (211-288)||(33631821-33631899)
chr8 (59-140)||(17084191-17084272)
chr8 (59-123)||(6388604-6388668)
chr8 (154-192)||(15173889-15173927)
chr8 (129-191)||(33631909-33631971)
chr8 (59-121)||(36274968-36275029)
chr8 (136-192)||(30481430-30481486)
chr8 (59-123)||(30903971-30904035)
chr8 (131-183)||(30904064-30904116)
chr8 (136-192)||(45236088-45236144)
[»] chr5 (9 HSPs)
chr5 (228-288)||(39422463-39422524)
chr5 (59-123)||(24207612-24207676)
chr5 (59-123)||(12457442-12457506)
chr5 (62-122)||(16311394-16311453)
chr5 (59-121)||(27900503-27900565)
chr5 (67-121)||(35584050-35584103)
chr5 (67-121)||(38972855-38972909)
chr5 (59-123)||(17153094-17153158)
chr5 (95-123)||(18451985-18452013)
[»] chr4 (23 HSPs)
chr4 (132-183)||(45065274-45065325)
chr4 (59-121)||(33516174-33516236)
chr4 (59-120)||(37384204-37384265)
chr4 (59-123)||(8843904-8843968)
chr4 (59-123)||(8856868-8856932)
chr4 (59-123)||(9929267-9929331)
chr4 (59-123)||(33616215-33616279)
chr4 (59-123)||(39086087-39086150)
chr4 (72-123)||(9280989-9281040)
chr4 (136-191)||(21544608-21544663)
chr4 (72-120)||(4741318-4741366)
chr4 (63-123)||(21714075-21714135)
chr4 (59-123)||(36919054-36919118)
chr4 (136-183)||(14605944-14605991)
chr4 (65-123)||(21956914-21956971)
chr4 (61-123)||(42907820-42907881)
chr4 (144-192)||(1866559-1866607)
chr4 (136-192)||(9929177-9929233)
chr4 (59-123)||(12075731-12075795)
chr4 (144-192)||(25298843-25298891)
chr4 (136-192)||(29527841-29527897)
chr4 (90-122)||(43553408-43553440)
chr4 (67-123)||(50376451-50376507)
[»] chr1 (10 HSPs)
chr1 (59-121)||(16903441-16903503)
chr1 (59-123)||(42729043-42729107)
chr1 (136-191)||(25154837-25154892)
chr1 (59-123)||(13692570-13692635)
chr1 (59-123)||(36421692-36421756)
chr1 (59-123)||(39219184-39219248)
chr1 (62-121)||(43513130-43513189)
chr1 (63-121)||(5703275-5703332)
chr1 (62-115)||(47644966-47645019)
chr1 (63-124)||(48576216-48576277)
[»] scaffold0059 (1 HSPs)
scaffold0059 (129-191)||(70111-70173)
[»] chr3 (5 HSPs)
chr3 (61-123)||(37032197-37032259)
chr3 (514-646)||(360575-360707)
chr3 (129-192)||(40796147-40796209)
chr3 (59-120)||(27937664-27937725)
chr3 (59-123)||(772893-772956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (136-183)||(211387-211434)
[»] scaffold0013 (1 HSPs)
scaffold0013 (136-182)||(128140-128186)


Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 153 - 655
Target Start/End: Complemental strand, 7978634 - 7978132
Alignment:
Q  153 attacacgtcccgtacccgtattttgaaatcaggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaagcctgtcaatttaggtttgattcggg 252  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7978634 attacacgtcccgtacccgtattttgaaatcgggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaaacctgtcaatttaggtttgattcggg 7978535  T
Q  253 cggtacccacaggtatgagctttgttgccatgtctaagagatgtataccatatttagaaatcaagtttgaaatactacttgaaatatgagcattttgatc 352  Q
    ||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978534 cggtatccacgggtatgaactttgttgccatgtctaagagctgtataccatatttagaaatcaagtttgaaatactacttgaaatatgagcattttgatc 7978435  T
Q  353 ttcatatagtactagacaacatgttaattgaaactttggtatttgaattttcctacagttactctacaatttcctgggcagctagtctagataaaggaaa 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978434 ttcatatagtactagacaacatgttaattgaaactttggtatttgaattttcctacagttactctacaatttcctgggcagctagtctagataaaggaaa 7978335  T
Q  453 acaagaaaatgtagaatatggatataaggcacatagtacagcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctgga 552  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978334 acaagaaaatgtacaatatggatataaggcacatagtacagcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctgga 7978235  T
Q  553 cacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttg 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978234 cacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttg 7978135  T
Q  653 ttg 655  Q
    |||    
T  7978134 ttg 7978132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 493 - 655
Target Start/End: Original strand, 8042352 - 8042514
Alignment:
Q  493 gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga 592  Q
    |||||| | |||||| | |||||||||||||||||| || |||| ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||| |    
T  8042352 gcaggatctgtcttttatttctttaatgcacttggctctgttgcatttgcctttgctggacacattgtggtgctggagatccaagcaacaattccgtcta 8042451  T
Q  593 caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttg 655  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||    
T  8042452 caccggagaaaccatctaagggtccaatgtggaaaggagttgttgttgcctacattattgttg 8042514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 500 - 655
Target Start/End: Original strand, 8032455 - 8032610
Alignment:
Q  500 cagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccgga 599  Q
    |||||||| | |||||||||||||| ||| || |||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||| ||    
T  8032455 cagtctttaatttctttaatgcactcggctctgttgcatttgcctatgctggacataatgtggtgctcgagatccaagcaacaattccatctacacctga 8032554  T
Q  600 gaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttg 655  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||    
T  8032555 gaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttg 8032610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 493 - 655
Target Start/End: Complemental strand, 7971361 - 7971199
Alignment:
Q  493 gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga 592  Q
    |||||| | |||||| | |||||||||||||||||| || |||| ||||||| ||| |||||||| |||||| | ||||||||||||||||||||||| |    
T  7971361 gcaggatctgtctttaatttctttaatgcacttggctctgttgcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtcta 7971262  T
Q  593 caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttg 655  Q
    |||| ||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||    
T  7971261 cacctgagaaaccatctaagggtccaatgtggaaaggagttattgttgcatacattgttgttg 7971199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 9402514 - 9402578
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| |||||||||||  |||| ||| |||||||| ||| || ||||||||||||||    
T  9402514 tgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttct 9402578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 29199942 - 29199903
Alignment:
Q  144 tatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  29199942 tatatccctgttacccgtcccgtacccgtattttgaaatc 29199903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 34178401 - 34178344
Alignment:
Q  129 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcagg 186  Q
    |||||| ||||||| ||||||| | |||| |||| ||||||||| |||||||||||||    
T  34178401 tttggggtgggtacctatatccttgttacccgtctcgtacccgtgttttgaaatcagg 34178344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 10925602 - 10925550
Alignment:
Q  63 agtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 115  Q
    |||||||| ||||||||||| || || ||| ||||||||||| ||||||||||    
T  10925602 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaatt 10925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 500 - 655
Target Start/End: Complemental strand, 2652 - 2497
Alignment:
Q  500 cagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccgga 599  Q
    |||||||| | |||||||||||||||||| |||| || ||||||||||| ||||||||||||||  | ||||||||||||||||||||||| ||||| ||    
T  2652 cagtctttaatttctttaatgcacttggctctatcgcgtttgcctatgccggacacaatgtggtactggagatccaagcaacaattccgtctacacctga 2553  T
Q  600 gaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttg 655  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||    
T  2552 gaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttg 2497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 533 - 633
Target Start/End: Original strand, 43854450 - 43854550
Alignment:
Q  533 ttgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttccaatgtggagaggagt 632  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||| ||||||||||||||||||    
T  43854450 ttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagaggagt 43854549  T
Q  633 t 633  Q
    |    
T  43854550 t 43854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 493 - 655
Target Start/End: Complemental strand, 41381798 - 41381636
Alignment:
Q  493 gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga 592  Q
    |||||| | |||||| | |||||||||||||||||  || |||||||||||||||| ||||||||||||||||| || || ||| | ||||| || || |    
T  41381798 gcaggatctgtctttaatttctttaatgcacttggttctgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatcta 41381699  T
Q  593 caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttg 655  Q
    |||| ||||||||||| |||| ||||||||||| ||||||| |  |||| ||||| |||||||    
T  41381698 cacctgagaaaccatctaagggtccaatgtggaaaggagttatctttgcctacatggttgttg 41381636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 13531875 - 13531939
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  13531875 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttct 13531939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 25210303 - 25210367
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| || ||| |||||||||||||    
T  25210303 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttct 25210367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 34544474 - 34544410
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||||| || |||||||| ||||||||    
T  34544474 tgtgaatgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttct 34544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 17845555 - 17845485
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatt 130  Q
    |||||||||||| ||||||| ||  ||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  17845555 tgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttt-tttacatt 17845485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 44057907 - 44057962
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 191  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||| ||||    
T  44057907 tgggtacatatatccccattacccgtcccgtaccggtattttgaaatcagggaaaa 44057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 29656898 - 29656836
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    ||||||| |||| ||||||||||   |||| ||| ||||||||||||||||||||||||||||    
T  29656898 tgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgatttt 29656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 30696850 - 30696925
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggat 136  Q
    ||||||||| || ||||||||||| | ||| ||| ||||||||| || ||||||||||||||  ||||||||||||||    
T  30696850 tgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattt--tttacatttgggat 30696925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 13954672 - 13954735
Alignment:
Q  60 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  13954672 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 13954735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 14095879 - 14095942
Alignment:
Q  60 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  14095879 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 14095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 43371570 - 43371633
Alignment:
Q  129 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    |||||| ||||||| ||||||||  |||| ||||||||||||||||||| ||||| || |||||    
T  43371570 tttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaac 43371633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 3547190 - 3547246
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||| |||||| |  |||| ||||||||||||||||||||||||| | ||||||    
T  3547190 tgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcggtaaaaac 3547246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 42995773 - 42995821
Alignment:
Q  73 tttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||| |||||    
T  42995773 tttacggtttaagtttttatttatataaaagagataataaattaatttt 42995821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 494 - 632
Target Start/End: Complemental strand, 14198244 - 14198106
Alignment:
Q  494 caggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgac 593  Q
    ||||||| |||||||  ||||| ||||| |||||   | | |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || ||    
T  14198244 caggaactgtctttggtttcttcaatgcccttggagatgtggcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatctac 14198145  T
Q  594 accggagaaaccatccaaggttccaatgtggagaggagt 632  Q
    |||||| |||||||| |||| ||||||||||||||||||    
T  14198144 accggaaaaaccatctaagggtccaatgtggagaggagt 14198106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 11472874 - 11472811
Alignment:
Q  60 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||||||||| |||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttct 11472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 42908107 - 42908050
Alignment:
Q  135 atgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||| || |||||    
T  42908107 atgggtacatatatccccattacccgtcccgtacccgtattttgaaatcggggaaaac 42908050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 10990918 - 10990879
Alignment:
Q  144 tatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10990918 tatatccctattacccgtcccgtacccgtattttgaaatc 10990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 18684010 - 18684058
Alignment:
Q  144 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||||| |||| ||||||||||||||||||||||||| || |||||    
T  18684010 tatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaac 18684058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 37103196 - 37103136
Alignment:
Q  132 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||||| | |||||||   |||| | ||||||||||||||||||||||||||||||||    
T  37103196 gggatgggtgcatatatcctcgttacccttcccgtacccgtattttgaaatcaggaaaaac 37103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 22973416 - 22973463
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||    
T  22973416 tgggtacagatatccccattacccgtcccgtacccgtattttgaaatc 22973463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 32546220 - 32546275
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 191  Q
    ||||||| ||||||||  |||| ||| ||||||||||||||||||||| |||||||    
T  32546220 tgggtacatatatccccgttacccgttccgtacccgtattttgaaatcgggaaaaa 32546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 29014994 - 29014961
Alignment:
Q  159 cgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||||||||||||||||||||| ||||||||    
T  29014994 cgtcccgtacccgtattttgaaatcgggaaaaac 29014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 12980405 - 12980461
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||| || |||||    
T  12980405 tgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 12980461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 26622979 - 26623035
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||||||||| || ||||| | |||| ||||||| ||||||||||||| |||||    
T  26622979 tgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaac 26623035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 28309538 - 28309570
Alignment:
Q  154 ttacacgtcccgtacccgtattttgaaatcagg 186  Q
    |||| ||||||||||||||||||||||||||||    
T  28309538 ttacccgtcccgtacccgtattttgaaatcagg 28309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 45380135 - 45380191
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||| ||||| ||  |||| |||||| |||||||||||||||||| ||||||||    
T  45380135 tgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgggaaaaac 45380191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 17108301 - 17108363
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  17108301 tgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgatttt 17108363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 29918532 - 29918611
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 140  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||||||||  ||||||||||||| ||||    
T  29918532 tgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattt--tttacatttgggacgggt 29918611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 5793510 - 5793572
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| ||||||||||    
T  5793510 tgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 5793572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 33631899 - 33631821
Alignment:
Q  211 agtcaaagccgaaaaagcctgtcaatttaggtttgattcgggcg-gtacccacaggtatgagctttgttgccatgtcta 288  Q
    ||||||||| | |||| || |||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||||    
T  33631899 agtcaaagcgggaaaaacccgtcaatttagatttggttcgggtgcgtacccacgggtatgggctttgttgccatgtcta 33631821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 17084272 - 17084191
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 140  Q
    |||||| | ||| |||||||| ||  |||||||| ||||||||| ||| |||||||||||||| |||||||| | |||||||    
T  17084272 tgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgatgggt 17084191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 6388668 - 6388604
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| |||||||||||  |||| | | ||||||||| || |||||||||||||||||    
T  6388668 tgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttct 6388604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 15173927 - 15173889
Alignment:
Q  154 ttacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  15173927 ttacccgtcccgtacccgtattttgaaatcgggaaaaac 15173889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 33631971 - 33631909
Alignment:
Q  129 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 191  Q
    |||||| |||||||||||||||| ||||| |||||| ||||| | |||||| |||||| ||||    
T  33631971 tttggggtgggtacttatatccccattactcgtcccatacccatgttttgagatcaggtaaaa 33631909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 36274968 - 36275029
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||||||||||| ||||||||||   |||| ||| ||||||||||||||| ||||||||||||    
T  36274968 tgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgatttt 36275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 30481486 - 30481430
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||| |||||||  ||||| |||| | ||| |||||||||||||||||||||||    
T  30481486 tgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaac 30481430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 30903971 - 30904035
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||| |||||  |||| ||| ||||||||| |  |||||||||||||||||    
T  30903971 tgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttct 30904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 30904064 - 30904116
Alignment:
Q  131 tgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    |||| |||||||||||||| | ||||| |||| ||||||||| ||||||||||    
T  30904064 tggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatc 30904116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 45236088 - 45236144
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||| ||||| || ||||| |||||| ||||||| ||||||||||||| |||||    
T  45236088 tgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaac 45236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 39422463 - 39422524
Alignment:
Q  228 cctgtcaatttaggtttgattcgggcggt-acccacaggtatgagctttgttgccatgtcta 288  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  39422463 cctgtcaatttgggtgtggttcgggcggttacccacaggtatgagctttgttgccatgtcta 39422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 24207612 - 24207676
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||| |||||||    
T  24207612 tgtgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttct 24207676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 12457442 - 12457506
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||||  |||| |||| ||| ||||| |||||| |||||||||||||||||    
T  12457442 tgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttct 12457506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 16311453 - 16311394
Alignment:
Q  62 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 122  Q
    |||| |||| |||||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttc 16311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 27900565 - 27900503
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    ||||| |||||| ||||||||||| ||||| ||| |||||||||| |  ||||||||||||||    
T  27900565 tgtgactgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgatttt 27900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 35584050 - 35584103
Alignment:
Q  67 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||| ||||||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaaggg-taataaattgatttt 35584103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 38972855 - 38972909
Alignment:
Q  67 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||| ||||||||||| |||||  || |||||||||||| |||||||||||||||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgatttt 38972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 17153094 - 17153158
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||||||||||| |||   ||| ||| ||| || ||||| |||||||||||||||||    
T  17153094 tgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttct 17153158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 18452013 - 18451985
Alignment:
Q  95 atataaaagggataataaattgattttct 123  Q
    |||||||||||||||||||||||||||||    
T  18452013 atataaaagggataataaattgattttct 18451985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 45065274 - 45065325
Alignment:
Q  132 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  45065274 gggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatc 45065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 33516236 - 33516174
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||| |||||||||    
T  33516236 tgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgatttt 33516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 37384204 - 37384265
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 120  Q
    |||||||||||| ||||||||||| |  || ||| |||||||||||||||||||||||||||    
T  37384204 tgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 8843968 - 8843904
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8843968 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8843904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 8856932 - 8856868
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8856932 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8856868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 9929331 - 9929267
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||||||||||||||||| |||| ||||||||| |||||  ||| | |||||||||||||||||    
T  9929331 tgtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttct 9929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 33616279 - 33616215
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| |||||||||||   ||| ||| |||||||||||| |||||||||||||||||    
T  33616279 tgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttct 33616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 39086087 - 39086150
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| || || ||||||||||||||    
T  39086087 tgtgagtgaaatgatttagggtttaagtttctatttatataaaaagg-tagtaaattgattttct 39086150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 9281040 - 9280989
Alignment:
Q  72 atttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  9281040 atttagggtttgaatttctatctatataaaagggataataaatttattttct 9280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 21544608 - 21544663
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 191  Q
    ||||||| |||||||| |||||  |||||||||||||||||||||||| |||||||    
T  21544608 tgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaa 21544663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 4741366 - 4741318
Alignment:
Q  72 atttagggtttaagtttatatctatataaaagggataataaattgattt 120  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||||||||    
T  4741366 atttagggtttgagtttctatttatataaaatggataataaattgattt 4741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 21714135 - 21714075
Alignment:
Q  63 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 21714075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 36919054 - 36919118
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| |||||| |||| ||||| ||| |||||||||| | ||||||| |||||||||    
T  36919054 tgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttct 36919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 14605991 - 14605944
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  14605991 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 14605944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 21956971 - 21956914
Alignment:
Q  65 tgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||| |||||||||||  |||| ||| |||||||||||| |||||||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttct 21956914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 42907820 - 42907881
Alignment:
Q  61 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||| | || ||||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttct 42907881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 1866607 - 1866559
Alignment:
Q  144 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    |||||||  ||||| |||| |||||||||||||||||||| ||||||||    
T  1866607 tatatccgcattacccgtctcgtacccgtattttgaaatcgggaaaaac 1866559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 9929233 - 9929177
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||| ||||||| | |||| ||| |  |||||||||||||||||||||||||||    
T  9929233 tgggtacctatatccatgttacccgtactatacccgtattttgaaatcaggaaaaac 9929177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 12075795 - 12075731
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||| ||||||| ||| || |||| ||||| ||| ||||||||| || |||||||||||||||||    
T  12075795 tgtgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttct 12075731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 25298891 - 25298843
Alignment:
Q  144 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    |||||||| ||||| | |||||||||||| |||||||||| ||||||||    
T  25298891 tatatccccattacccatcccgtacccgtgttttgaaatccggaaaaac 25298843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 29527841 - 29527897
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    ||||||| ||||||||  |||| |||| |||||||||||||||||||| || |||||    
T  29527841 tgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaac 29527897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 43553408 - 43553440
Alignment:
Q  90 tatctatataaaagggataataaattgattttc 122  Q
    |||||||||||||||| ||||||||||||||||    
T  43553408 tatctatataaaaggggtaataaattgattttc 43553440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 50376507 - 50376451
Alignment:
Q  67 aaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||| |||||| |||| ||||| ||| ||||||||| ||| ||||||||||||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttct 50376451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 16903441 - 16903503
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||| ||  ||||||||||||||    
T  16903441 tgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgatttt 16903503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 42729107 - 42729043
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| |||||| || ||||||| ||| |||||||||||||| ||||||| |||||||    
T  42729107 tgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttct 42729043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 25154892 - 25154837
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 191  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||| |||||||    
T  25154892 tgggtacttatatccccattactcgtcccgtactcgtgttttgaaatcgggaaaaa 25154837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 13692570 - 13692635
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataat-aaattgattttct 123  Q
    |||| ||||||| |||||||||||  |||| ||| ||||||||||||||||| |||||||||||||    
T  13692570 tgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaaattgattttct 13692635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 36421692 - 36421756
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    ||||| |||||| |||||| |||  ||||| ||| ||||||| ||||||||||||||||||||||    
T  36421692 tgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttct 36421756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 39219184 - 39219248
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||| ||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  39219184 tgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 39219248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 43513189 - 43513130
Alignment:
Q  62 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| |  | |||||||||||||    
T  43513189 gagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgatttt 43513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 5703332 - 5703275
Alignment:
Q  63 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 121  Q
    |||||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||    
T  5703332 agtgaaatgatttaggatttgagtttatat-tatataaaagatataataaattgatttt 5703275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 47645019 - 47644966
Alignment:
Q  62 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 115  Q
    ||||||||| ||||||| | | ||||| ||| ||||||||||||||||||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaatt 47644966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 48576277 - 48576216
Alignment:
Q  63 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctt 124  Q
    |||||||| ||||||||||| || || ||| |||| |||| |||| ||||||||||||||||    
T  48576277 agtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttctt 48576216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 70111 - 70173
Alignment:
Q  129 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 191  Q
    |||||| ||||||| |||||||   |||| ||||||||||||||||| |||||||||||||||    
T  70111 tttggggtgggtacatatatcctcgttacccgtcccgtacccgtattatgaaatcaggaaaaa 70173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 37032259 - 37032197
Alignment:
Q  61 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||| ||||||||||| ||||| ||| ||||||||| || ||||||||| |||||||    
T  37032259 tgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttct 37032197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 646
Target Start/End: Complemental strand, 360707 - 360575
Alignment:
Q  514 tttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaagg 613  Q
    |||||||||||||| || || || ||||||| ||| ||||| | ||||||  ||||||| ||||| ||| | || ||  ||   || ||||| ||||| |    
T  360707 tttaatgcacttggaacaatagcgtttgcctttgccggacatagtgtggttctagagattcaagctacattaccctcttcagaagaaaaaccttccaaag 360608  T
Q  614 ttccaatgtggagaggagttgttgttgcataca 646  Q
    | |||||||||||||| ||||||||||||||||    
T  360607 taccaatgtggagaggtgttgttgttgcataca 360575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 40796209 - 40796147
Alignment:
Q  129 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 192  Q
    |||||| ||||||| | |||||  ||||| ||||||||||||||||||||||||| ||||||||    
T  40796209 tttggggtgggtacatgtatcctcattacccgtcccgtacccgtattttgaaatc-ggaaaaac 40796147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 27937664 - 27937725
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 120  Q
    |||||||||||| |||||||||||| |||| ||| ||||||||||   ||||||||| ||||    
T  27937664 tgtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaattt 27937725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 772956 - 772893
Alignment:
Q  59 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 123  Q
    |||||||||||| ||| | ||||| ||||| ||| |||| ||||||| |||||||||||||||||    
T  772956 tgtgagtgaaatgattcaaggtttgagtttctatttatacaaaaggg-taataaattgattttct 772893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 211387 - 211434
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 183  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  211387 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 211434  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 128186 - 128140
Alignment:
Q  136 tgggtacttatatccctattacacgtcccgtacccgtattttgaaat 182  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||||    
T  128186 tgggtacatatatccccattacccgtcccgtacccgtattatgaaat 128140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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