View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_48 (Length: 266)
Name: NF19128_high_48
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 26971242 - 26970977
Alignment:
| Q |
9 |
acatcatcaagcacttataattagagaagtattagaatgactgtactgtattcaagctttttgatttaaggttaatagtattctgtacttcattatatcc |
108 |
Q |
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| T |
26971242 |
acatcttcaagcacttataattagagaagtattagaatgactgtactgtattcaagctttttgatttaatgttaatagtattctgtacttcattatatcc |
26971143 |
T |
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| Q |
109 |
ctcttcaaataattttttgacaga--------agtacattagtttttatagtattttctcatctaccaaaaattaaataccaaagtttgaattcaaatca |
200 |
Q |
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|||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26971142 |
ctcttcaaataactttttgccagacaaatattagtacattagtttttatagtattttctcatctaccaaaagttaaataccaaagtttgaattcaaatca |
26971043 |
T |
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| Q |
201 |
tttacttttatcttaatctagttgaactatttaaccattattttttcgataagtttaattagtatt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26971042 |
tttacttttatcttaatctagttgaactatttaacccttattttttcgataagtttaattagtatt |
26970977 |
T |
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