View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_54 (Length: 246)
Name: NF19128_high_54
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 50508870 - 50509070
Alignment:
| Q |
25 |
tcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttgtatatgtccaatattgtttcaggcttcaagatctgaaaagtaca |
124 |
Q |
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| T |
50508870 |
tcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttgtatatgtccaatattgtttcaggcttcaagatctgaaaagtaca |
50508969 |
T |
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| Q |
125 |
aagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagtgtatgaagaaggaatcatgctctaaggttaagtgggactc |
224 |
Q |
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| T |
50508970 |
aagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagagtatgaagaaggaatcatgctctaaggttaagtgggactc |
50509069 |
T |
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| Q |
225 |
a |
225 |
Q |
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| |
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| T |
50509070 |
a |
50509070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 10782969 - 10782764
Alignment:
| Q |
20 |
ttgtgtcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttgtatatgtccaatattgtttcaggcttcaagatctgaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
10782969 |
ttgtgtcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttctatatgtccaatattgtttcaggcttccagatccgaaaa |
10782870 |
T |
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| Q |
120 |
gtacaaagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagtgtatgaagaaggaatcatgctctaaggttaagtgg |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
10782869 |
gtataaagctgcaagtaattattattccaccacatatactgtggatgagcttatgcaatcaaagagtatgaagaaggaatcatgctctaagcttaagtgg |
10782770 |
T |
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| Q |
220 |
gactca |
225 |
Q |
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|||||| |
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| T |
10782769 |
gactca |
10782764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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