View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_high_61 (Length: 231)
Name: NF19128_high_61
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 25348031 - 25348217
Alignment:
| Q |
13 |
agcagagattagaaacagaaaaaagaaaattgatcatcacatttgacatctctaacacttagcgatgaaatgagagaattgttttatctttctccgttta |
112 |
Q |
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| T |
25348031 |
agcagagattagaaacggaaaaaataaaattgatcatcacatttgacatctctaacacttagcgatgaaatgagagaattgttttatctttctccgttta |
25348130 |
T |
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| Q |
113 |
ttaacaacaaaattcaaacagattaagattagtggatgtacatttagaagctgtgatggatggtatcctccaatccaaagaaaaagg |
199 |
Q |
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| T |
25348131 |
ttaacaacaaaattcaaacagattaagattagtggatgtacatttagaagctgtgatggatggtatcctccaaaccaaagaaaaagg |
25348217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 25350322 - 25350410
Alignment:
| Q |
111 |
tattaacaacaaaattcaaacagattaagattagtggatgtacatttagaagctgtgatggatggtatcctccaatccaaagaaaaagg |
199 |
Q |
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| T |
25350322 |
tattaacaacaaaattcaaacagattacgattagtggatgtacgtttagaagctgtgacggacaggatcctccaaaccaaagaaaaagg |
25350410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 25355769 - 25355828
Alignment:
| Q |
140 |
attagtggatgtacatttagaagctgtgatggatggtatcctccaatccaaagaaaaagg |
199 |
Q |
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| T |
25355769 |
attagtggatgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaagg |
25355828 |
T |
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