View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_high_63 (Length: 227)
Name: NF19128_high_63
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_high_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 26970078 - 26970261
Alignment:
| Q |
6 |
agcaccacctggcaggaaaggtcggtgggtggacacgtggaagccattttggggacatggaacacgatgttatgaaatgattattggtggtgacatttgg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26970078 |
agcaccacctggcaggaaaggtcggtgggtggacacgtggaaaccattttggggacatggaacacgatgttatgaaatgattattggtggtgacatttgg |
26970177 |
T |
|
| Q |
106 |
ctcactttctttgttgacacttggttcagttttttaaaaatctattgaactacattccgtacattcaaaggtatttttctctag |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26970178 |
ctcactttctttgttgacacttggttcagtttttttaaaatctattgaactacattccgtacattcaaaggtatttttttctag |
26970261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 26970906 - 26970954
Alignment:
| Q |
178 |
atttttctctagtgggaaattagatgaattttgtatttagtataggaaat |
227 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26970906 |
atttttctctaataggaaat-agatgaattttgtatttagtataggaaat |
26970954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University