View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_low_11 (Length: 573)
Name: NF19128_low_11
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_11 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Complemental strand, 33041432 - 33040892
Alignment:
| Q |
20 |
gtctggttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaacagagtgtg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041432 |
gtctggttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaacagagtgtg |
33041333 |
T |
|
| Q |
120 |
gaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatatggagcaagcatatgctctgtcggtcaaattccca |
219 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33041332 |
gaaacatgtcatcgaaaagcttaggccgcaaactcaaggggataaaaaatggaataggtagcatatggagcaagcatatgttctgtcggtcaaattccca |
33041233 |
T |
|
| Q |
220 |
cgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaag |
319 |
Q |
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|
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33041232 |
cgttgctctggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatccgaagggttgaaaag |
33041133 |
T |
|
| Q |
320 |
agtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagatcatcaagactcctcaac |
419 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
33041132 |
agtgagacattttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccacattagagatcgtcaagactcctcaac |
33041033 |
T |
|
| Q |
420 |
aatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccaaattattcttttcggtcatgttttt |
519 |
Q |
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| T |
33041032 |
aatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccgaattattcttttctgtcatgttttt |
33040933 |
T |
|
| Q |
520 |
tatgttctctttcctttatgtgtatggatagcccggtccct |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
33040932 |
tatgttctctttcctttatgtgtatggatagcccggtccct |
33040892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 62 - 559
Target Start/End: Complemental strand, 33020268 - 33019761
Alignment:
| Q |
62 |
tcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaattgaagggga |
161 |
Q |
| |
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||||||||||||||| ||||| | |||||| |||||||| |||||| || ||||||||| |||||||| ||||| | ||| | ||||| | ||||| | |
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| T |
33020268 |
tcagaaatttagaagagtgcatttagattggagcagttttgtgttgcgacgcagtgtggaagcatgtcattgaaaatcatagtctgcaaactcaagggca |
33020169 |
T |
|
| Q |
162 |
taaaaaatggaataggtagcatatg------------gagcaagcatatgctctgtcggtcaaattcccacgctgctttggatgtaactccaattgaacc |
249 |
Q |
| |
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| |||||| || |||||||||||| || |||||||| |||||||||| |||| ||||| | ||| |||||||||||||||||||||| |
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|
| T |
33020168 |
tgaaaaatcgactaggtagcatatcaaagagtgttgagaccaagcataggctctgtcggacaaagtcccatgttgcactggatgtaactccaattgaacc |
33020069 |
T |
|
| Q |
250 |
tattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgtt |
349 |
Q |
| |
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| ||||||||||||| |||||| |||||||||||||||||||||||| |||||| | ||||||||| |||||| ||||||||||||||| ||||| || |
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| T |
33020068 |
tgttcaacagggacagtgggcatatctaccacctgaattgcttttggatataatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccatt |
33019969 |
T |
|
| Q |
350 |
gttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagatcatcaagactcctcaacaatgtggaaggatcacatttcctatttcag |
449 |
Q |
| |
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||| ||| ||||||||| ||||||||||| ||||||||| || ||||||||| ||||||||||||| |||||||||| | | ||||||||||||||| |
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|
| T |
33019968 |
gttgtctgttgtgcttcggtatgtaaatcgtggaggtccatcacgttagagattgtcaagactcctcagcaatgtggaatgcttacatttcctatttcat |
33019869 |
T |
|
| Q |
450 |
tgaagcaggtaatcaattatttcacccactttctggtctaatccaaattattcttttcggtcatgttttttatgttctctttcctttatgtgtatggata |
549 |
Q |
| |
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||||||||||||| |||| ||| ||||||||||||||| || |||||||||| | | | ||| |||||||||||||||||||||||||||||||| || |
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|
| T |
33019868 |
tgaagcaggtaatgaatt-cttctcccactttctggtctgatacaaattattcgtattgctca-gttttttatgttctctttcctttatgtgtatgacta |
33019771 |
T |
|
| Q |
550 |
gcccggtccc |
559 |
Q |
| |
|
|||||||||| |
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| T |
33019770 |
gcccggtccc |
33019761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 238 - 558
Target Start/End: Complemental strand, 33026128 - 33025805
Alignment:
| Q |
238 |
tccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcct |
337 |
Q |
| |
|
||||||| ||||| ||| | ||||| |||||| || |||||||| |||||||||||||||||||||| | | ||||||| | |||||||||||||||||| |
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|
| T |
33026128 |
tccaattaaacctcttccaaagggagaatgggaaactctaccacgtgaattgcttttggacataatccgtaaggttgaagaaagtgagacatcttggcct |
33026029 |
T |
|
| Q |
338 |
gcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagatcatcaagactcctcaacaatgtggaaggatcacat |
437 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||||||| || ||||||| |||| |||| ||| ||||||||||||||||||| |
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| T |
33026028 |
gcacgtgctgttgttgtcgtctgtgcttcagtatgtaaatcatggaggtccgtcacaaaagagatcgtcaaaactcttcagcaatgtggaaggatcacat |
33025929 |
T |
|
| Q |
438 |
ttcctatttcagtgaagcaggtaatcaatta---tttcacccactttctggtctaatccaaattattcttttcggtcatgttttttatgttctctttcct |
534 |
Q |
| |
|
||||||||||| ||| ||||| ||| |||| |||||||||||||||||||||| ||||| |||||| || || ||||||||||||||||||||| |
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| T |
33025928 |
ttcctatttcattgatgcaggcaatacattaattcttcacccactttctggtctaattcaaatgattcttatccctcgagttttttatgttctctttcct |
33025829 |
T |
|
| Q |
535 |
ttatgtgtatggatagcccggtcc |
558 |
Q |
| |
|
||||||| ||| ||||| ||||| |
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|
| T |
33025828 |
ttatgtgcatgcttagcctggtcc |
33025805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 203 - 467
Target Start/End: Original strand, 32828684 - 32828948
Alignment:
| Q |
203 |
tgtcggtcaaattcccacgctgctttggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataa |
302 |
Q |
| |
|
||||||||||| || || | |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
32828684 |
tgtcggtcaaagtcgcatgttgctccggatgtaactccaattgaacctattcaacaaggacaatgggcgagtctacctcctgaattgcttttggacataa |
32828783 |
T |
|
| Q |
303 |
tctgaagggttgaaaagagtgagacatcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccatgttagagat |
402 |
Q |
| |
|
|| | ||||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||| |
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| T |
32828784 |
tccgtagggttgaagagagtgagacatcttggcctgctcgtgctgttgttgttttttgtgcttcggtatgtaaatcatggaggtccgttactaaggagat |
32828883 |
T |
|
| Q |
403 |
catcaagactcctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaatt |
467 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||||||| |||| || ||||| |||| |
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|
| T |
32828884 |
tatcaagactccccagcaatgcggaaggatcacatttcctatttcattgaaacaagtaataaatt |
32828948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 413 - 559
Target Start/End: Complemental strand, 33030452 - 33030307
Alignment:
| Q |
413 |
cctcaacaatgtggaaggatcacatttcctatttcagtgaagcaggtaatcaattatttcacccactttctggtctaatccaaattattcttttcggtca |
512 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||| ||| |
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|
| T |
33030452 |
cctcagcaatgtgaaaggatcacatttcctatttcagtgaagcaggtaataaattatt-cacccactttctggtctaatccaatttatcattttccctca |
33030354 |
T |
|
| Q |
513 |
tgttttttatgttctctttcctttatgtgtatggatagcccggtccc |
559 |
Q |
| |
|
| ||||||||||||| ||||||| ||||||||| ||||||||||||| |
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|
| T |
33030353 |
tattttttatgttctatttccttcatgtgtatgcatagcccggtccc |
33030307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 33030563 - 33030517
Alignment:
| Q |
230 |
gatgtaactccaattgaacctattcaacagggacaatgggcaagtct |
276 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
33030563 |
gatgtaactccagttgaacctattcaacagggacaatgggaaagtct |
33030517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 33015868 - 33015808
Alignment:
| Q |
79 |
tgcatctggattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagc |
139 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||| ||||||| |
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|
| T |
33015868 |
tgcatttggattggtgcagttttgtgttgcgacagagtttggaaacatggcattgaaaagc |
33015808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 33026354 - 33026270
Alignment:
| Q |
25 |
gttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaac |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| | ||||||||||||| ||||| |||||| |||||||||| ||||||||| |
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|
| T |
33026354 |
gttaccacgagtctttgcctttgtattttggttaggataagaaatttagaagtgtgcat-tggatt-gtgcagttttgtgttgcaac |
33026270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 32828584 - 32828651
Alignment:
| Q |
118 |
tggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatat |
185 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| || | |||||||| |||||||||||||||||||||| |
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|
| T |
32828584 |
tggaaacatgtcattcaaaagtatagtccgcgaactcaaggggatgaaaaatggaataggtagcatat |
32828651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 385
Target Start/End: Complemental strand, 7880317 - 7880175
Alignment:
| Q |
243 |
ttgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacataatctgaagggttgaaaagagtgagacatcttggcctgcacg |
342 |
Q |
| |
|
||||||||||||| |||||||||||||| | | ||||| |||||||||| | || ||||| ||||||| ||| ||| ||||| |||||||||||||| |
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|
| T |
7880317 |
ttgaacctattcagcagggacaatgggctaatataccatctgaattgctacttgatataattcgaagggtagaagagaccgagacttcttggcctgcacg |
7880218 |
T |
|
| Q |
343 |
tgctgttgttatcttttgtgcttcagtatgtaaatcatggagg |
385 |
Q |
| |
|
||||||||| | | ||||||||| || ||||||||||||||| |
|
|
| T |
7880217 |
tgctgttgtcgtttcttgtgcttctgtgtgtaaatcatggagg |
7880175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 12494 - 12550
Alignment:
| Q |
329 |
tcttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggagg |
385 |
Q |
| |
|
||||||||||||||| ||||||| || | ||||||||| || ||||||||||||||| |
|
|
| T |
12494 |
tcttggcctgcacgtactgttgtcatttcttgtgcttctgtgtgtaaatcatggagg |
12550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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