View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_12 (Length: 564)
Name: NF19128_low_12
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_12 |
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| [»] chr6 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Complemental strand, 1430625 - 1430078
Alignment:
| Q |
17 |
aaaataggaaagttcaaggactcaaaaacttattgtgaaaacgcgcttcggattttcgggaagaaaaaacctggaatctctctggaagagattgctaatg |
116 |
Q |
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| T |
1430625 |
aaaataggaaagttcaaggactcaaaaacttattgtgaaaacgcgcttcggattttcgggaagaaaaaacctggaatctctctggaagagattgctaatg |
1430526 |
T |
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| Q |
117 |
gattgatagacgttgctgcaatttatcaatccatgaatgatttggaaaagggtttgaagttactcaaaaaagcattgaagatatacaacaatgttcctgg |
216 |
Q |
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| T |
1430525 |
gattgatagatgttgctgcaatttatcaatccatgaatgatttggaaaagggtttgaagttactcaaaaaagcattgaagatatacaacaatgttcctgg |
1430426 |
T |
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| Q |
217 |
tcaacacagtactattgctggaattgaagcacaaatgggagttatgtattatatgttaggaaactattctgattcttataacatctttaaaagtgctgtc |
316 |
Q |
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| T |
1430425 |
tcaacacagtactattgctggaattgaagcacaaatgggagttatgtattatatgttaggaaactattctgattcttataacatctttaaaagtgctgtc |
1430326 |
T |
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| Q |
317 |
acgaaatttcgtgctagcggagagaaaaaatcggctttgttcggaattgcattgaaccaaatgggacttgcttgtgtccaaaggtatgctataaatgaag |
416 |
Q |
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| T |
1430325 |
acgaaatttcgtgctagcggagagaaaaaatcggctttgttcggaattgcattgaaccaaatgggacttgcttgtgtccaaaggtatgctataaatgaag |
1430226 |
T |
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| Q |
417 |
ctgcagatttgtttgaagaggctaggactattttggaaaaagagtatggtccttatcatccagataccttaggagtttatagcaatcttgcaggaaccta |
516 |
Q |
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| T |
1430225 |
ctgcagatttgtttgaagaggctaggactattttggaaaaagagtatggtccttatcatccagataccttaggagtttatagcaatcttgcaggaaccta |
1430126 |
T |
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| Q |
517 |
cgacgcaatgggaaggtaacatcgtcattgacccttaaatctcgttac |
564 |
Q |
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| T |
1430125 |
cgacgcaatgggaaggtaacatcgtcattgacccttaaatctcgttac |
1430078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 1248023 - 1248086
Alignment:
| Q |
219 |
aacacagtactattgctggaattgaagcacaaatgggagttatgtattatatgttaggaaacta |
282 |
Q |
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| T |
1248023 |
aacaaagtactattggtggaattgaagcacaaatgggagttatgtattatatgttagaaaacta |
1248086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 1242331 - 1242382
Alignment:
| Q |
264 |
attatatgttaggaaactattctgattcttataacatctttaaaagtgctgt |
315 |
Q |
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| T |
1242331 |
attatatgttaggaaactattctgaattttataacatctttaaaagttctgt |
1242382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 1247969 - 1248027
Alignment:
| Q |
152 |
aatgatttggaaaagggtttga---agttactcaaaaaagcattgaagatatacaacaa |
207 |
Q |
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| T |
1247969 |
aatgatttggaaaagggtttgatgaagttactcaaaaaagcattgaaaatatataacaa |
1248027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 1242271 - 1242311
Alignment:
| Q |
182 |
aaaaaagcattgaagatatacaacaatgttcctggtcaaca |
222 |
Q |
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| T |
1242271 |
aaaaaagcattgaaaatatgtaacaatgttcctggtcaaca |
1242311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 384 - 564
Target Start/End: Complemental strand, 8064282 - 8064102
Alignment:
| Q |
384 |
ttgcttgtgtccaaaggtatgctataaatgaagctgcagatttgtttgaagaggctaggactattttggaaaaagagtatggtccttatcatccagatac |
483 |
Q |
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| T |
8064282 |
ttgcttgtgtccaaaggtatgctataaatgaagctgaggatttgttcaaagaggctaggacgatattggaaaaagagtatggtccttatcatccagatac |
8064183 |
T |
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| Q |
484 |
cttaggagtttatagcaatcttgcaggaacctacgacgcaatgggaaggtaacatcgtcattgacccttaaatctcgttac |
564 |
Q |
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| T |
8064182 |
cttaggagtttattgcaatcttgtcagaacctatgatgcaatgggaaggtaacatcgtcattgacccttaaatctccttac |
8064102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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