View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_low_13 (Length: 540)

Name: NF19128_low_13
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_low_13
NF19128_low_13
[»] chr1 (18 HSPs)
chr1 (19-532)||(6525341-6525854)
chr1 (433-530)||(6515064-6515161)
chr1 (427-529)||(6497714-6497816)
chr1 (414-529)||(6503035-6503150)
chr1 (234-343)||(47775326-47775435)
chr1 (234-343)||(47771228-47771337)
chr1 (222-345)||(6497463-6497586)
chr1 (182-340)||(47700854-47701012)
chr1 (433-532)||(6510674-6510773)
chr1 (216-345)||(6510440-6510569)
chr1 (240-343)||(47758072-47758175)
chr1 (243-337)||(6502843-6502937)
chr1 (243-343)||(47743674-47743774)
chr1 (243-325)||(47627678-47627760)
chr1 (243-340)||(6514866-6514963)
chr1 (240-340)||(47711194-47711294)
chr1 (267-319)||(47593658-47593710)
chr1 (266-310)||(47679177-47679221)
[»] chr5 (6 HSPs)
chr5 (219-337)||(28859739-28859857)
chr5 (229-343)||(27368303-27368417)
chr5 (240-340)||(28828672-28828772)
chr5 (216-334)||(28854349-28854467)
chr5 (434-529)||(28828946-28829041)
chr5 (252-340)||(469758-469846)
[»] scaffold0341 (4 HSPs)
scaffold0341 (433-532)||(12354-12453)
scaffold0341 (427-529)||(4728-4829)
scaffold0341 (216-345)||(12120-12249)
scaffold0341 (243-337)||(4522-4616)
[»] chr8 (1 HSPs)
chr8 (243-343)||(11225254-11225354)
[»] chr7 (7 HSPs)
chr7 (261-343)||(20167898-20167980)
chr7 (251-343)||(20285109-20285201)
chr7 (263-319)||(20264209-20264265)
chr7 (251-343)||(20294826-20294918)
chr7 (252-343)||(20303867-20303958)
chr7 (263-319)||(20231750-20231806)
chr7 (263-319)||(20243822-20243878)
[»] chr2 (4 HSPs)
chr2 (232-302)||(2690505-2690575)
chr2 (270-343)||(2716879-2716952)
chr2 (270-343)||(2723502-2723575)
chr2 (270-343)||(2745332-2745405)
[»] chr4 (1 HSPs)
chr4 (280-341)||(36437521-36437582)


Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 6525854 - 6525341
Alignment:
Q  19 gacccatctctccaatttctccatacctacaagaatatttccatatgcaaaatgcaagttagattacacttctagagtaatgtaatcttacacattatct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525854 gacccatctctccaatttctccatacctacaagaatatttccatatgcaaaatgcaagttagattacacttctagagtaatgtaatcttacacattatct 6525755  T
Q  119 tccaattccatacttctattgatatggaagaaggtatgacggaagaaattaacggactactttacttacaaagctgagtaaatactccgtactagttcca 218  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525754 tccaattccatacttctattgatatggaagaagatatgactgaagaaattaacggactactttacttacaaagctgagtaaatactccgtactagttcca 6525655  T
Q  219 tgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525654 tgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcat 6525555  T
Q  319 actccggtgccatatatccactgcaaacaatacaaataattattctcaactaaatagaatctttccacaatcatgcatcttcggtcaatttatagcaact 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6525554 actccggtgccatatatccactgcaaacaatacaaataattattctcaactaaatagaatctttccacaatcatgcatcttcggtcaatttatagcaatt 6525455  T
Q  419 aatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525454 aatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatc 6525355  T
Q  519 ttaggattcatctc 532  Q
    ||||||||||||||    
T  6525354 ttaggattcatctc 6525341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 433 - 530
Target Start/End: Original strand, 6515064 - 6515161
Alignment:
Q  433 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatc 530  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  6515064 atacttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatc 6515161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 427 - 529
Target Start/End: Original strand, 6497714 - 6497816
Alignment:
Q  427 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 526  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| | ||||||||||||    
T  6497714 ttttgaatacttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggatt 6497813  T
Q  527 cat 529  Q
    |||    
T  6497814 cat 6497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 414 - 529
Target Start/End: Original strand, 6503035 - 6503150
Alignment:
Q  414 caactaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctg 513  Q
    |||| ||||||| ||||| || ||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||| |||||||||||||| |    
T  6503035 caaccaatactttttttgaatgcttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcag 6503134  T
Q  514 ctatcttaggattcat 529  Q
    ||||||||||||||||    
T  6503135 ctatcttaggattcat 6503150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 47775435 - 47775326
Alignment:
Q  234 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 333  Q
    ||||| || ||||||| ||||||||||| |||||| || |||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  47775435 tttttatgaccacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatat 47775336  T
Q  334 atccactgca 343  Q
    ||||||||||    
T  47775335 atccactgca 47775326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 47771337 - 47771228
Alignment:
Q  234 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 333  Q
    ||||| || ||||||||||||||||||| |||||| ||||| ||||| ||||| || || || |||||||||||||||||||||||||| |||||||| |    
T  47771337 tttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgt 47771238  T
Q  334 atccactgca 343  Q
    |||| |||||    
T  47771237 atccgctgca 47771228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 6497463 - 6497586
Alignment:
Q  222 cgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatact 321  Q
    |||||||||||||||||    |||||||  || ||||||| ||||| ||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| |    
T  6497463 cgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaatacatccgacttcactgaaaattgtccgtgcatagcatatt 6497562  T
Q  322 ccggtgccatatatccactgcaaa 345  Q
    | ||||||||||||||||| ||||    
T  6497563 caggtgccatatatccactacaaa 6497586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 47700854 - 47701012
Alignment:
Q  182 acttacaaagctgagtaaatactccgtactagttccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaat 281  Q
    |||||||||||| ||||||| ||||  |||   ||||||| ||||||||||  | || ||||||||||||||||| ||||  | ||| |||||||||||     
T  47700854 acttacaaagctaagtaaatcctcctgactctgtccatgaagaatgccactaatcttttggccacttataatctctagaactagtacgccaaaactaaaa 47700953  T
Q  282 acatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 340  Q
    ||||| || || |||||||||||||||  ||||||||| ||  ||||||||||||||||    
T  47700954 acatccgatttgactgaaaattgtccaaacattgcatattcgagtgccatatatccact 47701012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 433 - 532
Target Start/End: Original strand, 6510674 - 6510773
Alignment:
Q  433 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 532  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  6510674 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 6510773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 345
Target Start/End: Original strand, 6510440 - 6510569
Alignment:
Q  216 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 315  Q
    |||| ||||||||||||||||||    ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| ||||||     
T  6510440 ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcatta 6510539  T
Q  316 catactccggtgccatatatccactgcaaa 345  Q
    ||||||| ||||||||||||||||| ||||    
T  6510540 catactcaggtgccatatatccactacaaa 6510569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 47758072 - 47758175
Alignment:
Q  240 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 339  Q
    ||||||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || |||||||||||||    
T  47758072 tggccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccac 47758171  T
Q  340 tgca 343  Q
    ||||    
T  47758172 tgca 47758175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 6502843 - 6502937
Alignment:
Q  243 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 337  Q
    ||||||| ||| ||||||| ||||| ||||||||| || |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  6502843 ccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 6502937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 343
Target Start/End: Original strand, 47743674 - 47743774
Alignment:
Q  243 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgc 342  Q
    |||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || ||||||||||||||||    
T  47743674 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47743773  T
Q  343 a 343  Q
    |    
T  47743774 a 47743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 47627760 - 47627678
Alignment:
Q  243 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccgg 325  Q
    ||||| |||||||| |||| ||  || ||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||    
T  47627760 ccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccgg 47627678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 6514866 - 6514963
Alignment:
Q  243 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 340  Q
    ||||||| ||| |||||||  |||| |||||||||||| |||||||| ||   |||||||||||||||| | |||||||| ||||||||||| |||||    
T  6514866 ccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccact 6514963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 47711194 - 47711294
Alignment:
Q  240 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 339  Q
    ||||||||||||||||| | ||  ||||| ||||||||||| |||||||| || || ||||||| ||||  | || ||||||| || |||||||||||||    
T  47711194 tggccacttataatctccaaaactaatactccaaaactaaaaacatctgattttaccgaaaattctccaaaccttacatactcgggagccatatatccac 47711293  T
Q  340 t 340  Q
    |    
T  47711294 t 47711294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 47593710 - 47593658
Alignment:
Q  267 acaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 319  Q
    |||||||||||||| ||||| |||||| ||||||| |||||| ||||||||||    
T  47593710 acaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcata 47593658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 47679221 - 47679177
Alignment:
Q  266 tacaccaaaactaaatacatctgacttcactgaaaattgtccatg 310  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  47679221 tacaccaaaactaaacacatctgacttaactgagaattgtccatg 47679177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 28859739 - 28859857
Alignment:
Q  219 tgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcat 318  Q
    |||||||||| ||| || || |||||||||||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||| |||||||||| |||    
T  28859739 tgacgaatgcaactattcttttggccacttataatctcaagaaccagaacaccaaaactaaagacatctgatttcactgaaaattctccatgcattacat 28859838  T
Q  319 actccggtgccatatatcc 337  Q
    |||| ||||||||||||||    
T  28859839 actcaggtgccatatatcc 28859857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 27368303 - 27368417
Alignment:
Q  229 cactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgc 328  Q
    |||| ||||| || |||||||||||||||||||  ||||| ||||||||| | |||||||| || || ||||||| ||||||||| |||||||| |||||    
T  27368303 cactatttttatgaccacttataatctcaagaagtaatactccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgc 27368402  T
Q  329 catatatccactgca 343  Q
    |||||||||||||||    
T  27368403 catatatccactgca 27368417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 28828672 - 28828772
Alignment:
Q  240 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 339  Q
    ||||||||||||||||||||||  | ||||||||||| ||| |||||||| ||||| ||||||| |||||||||| ||||||| |||||||| |||||||    
T  28828672 tggccacttataatctcaagaactagtacaccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccac 28828771  T
Q  340 t 340  Q
    |    
T  28828772 t 28828772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 28854349 - 28854467
Alignment:
Q  216 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 315  Q
    |||||| || ||||||| || ||  |||||||||||||||||||||  | |||||||||||| || |||||||| || |||||||||| ||||||||||     
T  28854349 ccatgatgagtgccactattctttaggccacttataatctcaagaactagtacaccaaaactgaagacatctgattttactgaaaattctccatgcatta 28854448  T
Q  316 catactccggtgccatata 334  Q
    ||||||| |||||||||||    
T  28854449 catactcaggtgccatata 28854467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 434 - 529
Target Start/End: Original strand, 28828946 - 28829041
Alignment:
Q  434 tacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcat 529  Q
    ||||||||||||||| ||||||||  |||||||| | || ||||| ||||||  ||  ||||| ||||||||||||||||||||||||| ||||||    
T  28828946 tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcat 28829041  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 469758 - 469846
Alignment:
Q  252 atctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 340  Q
    ||||||||||| |  || |||||||| || ||||| || ||| | ||||||||||| ||||||||||| ||||| | |||||| |||||    
T  469758 atctcaagaattataactccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccact 469846  T

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Target: scaffold0341 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 433 - 532
Target Start/End: Original strand, 12354 - 12453
Alignment:
Q  433 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 532  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  12354 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 12453  T

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Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 529
Target Start/End: Original strand, 4728 - 4829
Alignment:
Q  427 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 526  Q
    ||||| || ||||||| |||||||||||||| ||||| ||| |||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||    
T  4728 ttttgaatgcttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggatt 4826  T
Q  527 cat 529  Q
    |||    
T  4827 cat 4829  T

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Target: scaffold0341; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 345
Target Start/End: Original strand, 12120 - 12249
Alignment:
Q  216 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 315  Q
    |||| ||||||||||||||||||    ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| ||||||     
T  12120 ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcatta 12219  T
Q  316 catactccggtgccatatatccactgcaaa 345  Q
    ||||||| ||||||||||||||||| ||||    
T  12220 catactcaggtgccatatatccactacaaa 12249  T

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Target: scaffold0341; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 4522 - 4616
Alignment:
Q  243 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 337  Q
    ||||||| ||| ||||||| ||||| ||||||||| || |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  4522 ccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 4616  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 11225354 - 11225254
Alignment:
Q  243 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgc 342  Q
    |||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || ||||||||||||||||    
T  11225354 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 11225255  T
Q  343 a 343  Q
    |    
T  11225254 a 11225254  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 20167898 - 20167980
Alignment:
Q  261 atcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    ||||| |||||||| ||||| |||||||| ||| |||||||| |||| |||||||||||||| || | |||||| ||||||||    
T  20167898 atcaaaacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactgca 20167980  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 20285201 - 20285109
Alignment:
Q  251 aatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    |||||| || ||||| |||||||||||||| | |||||| ||| ||||||||  ||| ||||||||||| ||||| | |||||| ||||||||    
T  20285201 aatctctagtatcaaaacaccaaaactaaaaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgca 20285109  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 20264265 - 20264209
Alignment:
Q  263 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 319  Q
    |||||||||||| ||||| |||||||||||| ||||||||  ||| |||||||||||    
T  20264265 caatacaccaaagctaaaaacatctgacttctctgaaaataatccttgcattgcata 20264209  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 20294918 - 20294826
Alignment:
Q  251 aatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    |||||| || ||||| |||||||| ||||| |||||||| ||| ||||||||  ||| ||||||||||| || || | |||||| ||||||||    
T  20294918 aatctctagcatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgca 20294826  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 20303958 - 20303867
Alignment:
Q  252 atctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||| |||||||  ||||  ||||||| || || || | |||||| ||||||||    
T  20303958 atctctagaatcaatacaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactgca 20303867  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 20231806 - 20231750
Alignment:
Q  263 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 319  Q
    |||||||||||| ||||| |||||||| ||| ||||||||  ||| |||||||||||    
T  20231806 caatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcata 20231750  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 20243878 - 20243822
Alignment:
Q  263 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 319  Q
    |||||||||||| ||||| |||||||| ||| ||||||||  ||| |||||||||||    
T  20243878 caatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcata 20243822  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 2690505 - 2690575
Alignment:
Q  232 tgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaat 302  Q
    |||||||| ||||||| | |||||| || | |||||| ||||||||| ||||||||||||| |||||||||    
T  2690505 tgtttttgcggccactcacaatctctagtagcaatacgccaaaactatatacatctgacttgactgaaaat 2690575  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 2716879 - 2716952
Alignment:
Q  270 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    |||||||||||||||||||| ||| |||||||   ||| | ||||||||| ||||| | ||| |||||||||||    
T  2716879 ccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacatgtatccactgca 2716952  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 2723502 - 2723575
Alignment:
Q  270 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    |||||||||||||||||||| ||| |||||||  | || | ||||||||| ||||| | ||| |||||||||||    
T  2723502 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgca 2723575  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 2745332 - 2745405
Alignment:
Q  270 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 343  Q
    |||||||||||||||||||| ||| |||||||  | || | ||||||||| ||||| | ||| |||||||||||    
T  2745332 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgca 2745405  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 36437521 - 36437582
Alignment:
Q  280 atacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactg 341  Q
    ||||||| |||||||| ||||||||||| | ||| ||||||||||| | |||||| ||||||    
T  36437521 atacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccactg 36437582  T

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