View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_low_2 (Length: 764)
Name: NF19128_low_2
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 229 - 746
Target Start/End: Complemental strand, 30510543 - 30510024
Alignment:
| Q |
229 |
gcgttgttctcgtatcttttacttctaatccagtacgttgttcta-caatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttgg |
327 |
Q |
| |
|
|||||||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510543 |
gcgttgttttcgtatcttttacttccaatatggtctgttgttctaacaatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttgg |
30510444 |
T |
|
| Q |
328 |
ttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttttgtattgcatgttggcgggaag |
427 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510443 |
ttggcaaaagatcggcgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttttgtattgcatgttggcgggaag |
30510344 |
T |
|
| Q |
428 |
gtaaataaatgttgtccatttattc-aaaaaattgctaaatgctaacatatgatttggttcaacatgctaataataatacttataattcagggactgtgg |
526 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510343 |
gtaaataaatgttgttcatttttttgaaaaaattgctaaatgctaacatatgatttggttcaacatgctaataataatacttataattcagggactgtgg |
30510244 |
T |
|
| Q |
527 |
ctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggtgaataatttcttcatgtttt |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510243 |
ctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggtgaataatttcttcatgtttt |
30510144 |
T |
|
| Q |
627 |
ctgaacgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttactttttctgattccttttattcaggcaaaga |
726 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510143 |
cttatcgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttactttttctgattccttttattcaggcaaaga |
30510044 |
T |
|
| Q |
727 |
aggctactgatagagtttat |
746 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30510043 |
aggctactgatagagtttat |
30510024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 227 - 746
Target Start/End: Original strand, 24709040 - 24709544
Alignment:
| Q |
227 |
tggcgttgttctcgtatcttttacttctaatccagtacgttgttcta-caatgcaaatgatatccttcttaactatgatccaggcactgctagaggagtt |
325 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
24709040 |
tggcgttgttttcgtatcttttacttctaatccagtttcttgttctaacaatgcaagtgatatccttgttaactacgatccaggcactgttagaggagtt |
24709139 |
T |
|
| Q |
326 |
ggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttttgtattgcatgttggcggga |
425 |
Q |
| |
|
||| ||||||| || || |||||||||||||||||||| |||||||| || |||| ||||||||| |||||||||||||| ||||||||| |||| |||| |
|
|
| T |
24709140 |
ggtaggcaaaatattggcgcatatgtcaatctcgggtcttactatttggtagggactccagcagccgttgtattagctttcgtattgcatattggtggga |
24709239 |
T |
|
| Q |
426 |
aggtaaataaatgttgtccatttattcaaaaaattgctaaatgctaacatatgatttggttcaacatgctaataataatacttataattcagggactgtg |
525 |
Q |
| |
|
||||||||||||||||||| || || ||||||| ||||||| ||||||||||||||||||||||||||||||| || |||| ||||||| | |
|
|
| T |
24709240 |
aggtaaataaatgttgtccggtttttaaaaaaat-------tgctaacttatgatttggttcaacatgctaataataatatttctaatgtagggactata |
24709332 |
T |
|
| Q |
526 |
gctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggtgaataatttcttcatgttt |
625 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24709333 |
tctggggttcatatgtgcactcattgttcaagtattttctctaacaatcattacagtacgcactgattgggagaaagaggtgaaggatttcttcatgttt |
24709432 |
T |
|
| Q |
626 |
tctgaacgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttactttttctgattccttttattcaggcaaag |
725 |
Q |
| |
|
||| || ||||||||||| ||||||| |||| |||||| || |||||||| || ||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
24709433 |
tctaaagattctctttcatccttttgatttatat-----tcatgtttt---tgatattgatatgcctttattttttctgatt-ttttttttcaggcaaag |
24709523 |
T |
|
| Q |
726 |
aaggctactgatagagtttat |
746 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
24709524 |
aaggctaccgatagagtttat |
24709544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 30511348 - 30511134
Alignment:
| Q |
9 |
gattatactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30511348 |
gattatactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaac |
30511249 |
T |
|
| Q |
109 |
tttctggatggaatacaaagtgttctttcaggtttctcttcttccctataacttttaatttcttgtcttcatagtggccgagtcaaaaacaatgatagag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||| ||||||| |
|
|
| T |
30511248 |
tttctggatggaatacaaagtgttctttcaggtttctcttcttccctataacttttaatttctt-tcttcatagagactgagtcaaaaacaacgatagag |
30511150 |
T |
|
| Q |
209 |
acatatgggagcttct |
224 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
30511149 |
acaaatgggagcttct |
30511134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 24708546 - 24708761
Alignment:
| Q |
9 |
gattatactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaac |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24708546 |
gattatactaattcgcaatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgcctattattgcagtatccaac |
24708645 |
T |
|
| Q |
109 |
tttctggatggaatacaaagtgttctttcaggtttctcttcttccctataacttttaatttcttgtcttcatagtggccgagtcaaaaacaatgatagag |
208 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
24708646 |
tttctggatggacttcaatgtgttctttcaggtttctcttattccaaataacgtttaatttattgtcttcatagtggccgattaaaaaacaatgatagag |
24708745 |
T |
|
| Q |
209 |
acatatgggagcttct |
224 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
24708746 |
acatatgggagtttct |
24708761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 297 - 609
Target Start/End: Complemental strand, 30501237 - 30500931
Alignment:
| Q |
297 |
actatgatccaggcactgctagaggagttggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgt |
396 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| || || | || | ||||||||| || |||||||||||||| || ||||||||||| ||||| |
|
|
| T |
30501237 |
actatgattcaggcactgctagaggatgtggttggcagaaaatttgcgcgtttgtcaatcttggatcatactatttagtcggaattccagcagctgttgt |
30501138 |
T |
|
| Q |
397 |
attagcttttgtattgcatgttggcgggaaggtaaataaatgttgtccatttattcaaaaaattgctaaatgcta-acatatgatttggttcaacatgct |
495 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| || ||||| |||||| | ||||||||| || || ||||||||| | || || |||| |
|
|
| T |
30501137 |
attagcttttgtactgcatattggcgggaaggtgaa-aaatg--atccattctctgcgaaaattgct--atcatattcatatgattggatttgacctgct |
30501043 |
T |
|
| Q |
496 |
aataataatacttataattcagggactgtggctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgg |
595 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||||||||| |||||||| ||| | ||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30501042 |
aata--aatatttataatgtaggggctgtggctggggattatatgtgccctcattgttcacgtactttgtctaacgatcattacaatacgcactgattgg |
30500945 |
T |
|
| Q |
596 |
gagaaagaggtgaa |
609 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30500944 |
gagaaagaggtgaa |
30500931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 297 - 609
Target Start/End: Complemental strand, 30482895 - 30482591
Alignment:
| Q |
297 |
actatgatccaggcactgctagaggagttggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgt |
396 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || || || |||| ||| ||||| || ||||| |||||| ||||||||||||| || ||||| |
|
|
| T |
30482895 |
actataattcaggcactgctagaggatgtggttggcagaaaattggcgcatttgttaatcttggatcatattatttaattgggattccagccgctgttgt |
30482796 |
T |
|
| Q |
397 |
attagcttttgtattgcatgttggcgggaaggtaaataaatgttgtccatttattcaaaaaattgctaaatgctaacatatgatttggttcaacatgcta |
496 |
Q |
| |
|
||| ||||||||| | ||| |||||||||||||||| | | | ||||||| |||| ||| | ||| | |||||||||||||||||| | ||| |
|
|
| T |
30482795 |
attcgcttttgtactacatattggcgggaaggtaaaaataaatggtccattctttcatgaaaat------tgcgatcatatgatttggttcaacctacta |
30482702 |
T |
|
| Q |
497 |
ataataatacttataattcagggactgtggctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattggg |
596 |
Q |
| |
|
|||| ||| ||||||| |||| ||||| ||||||| |||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
30482701 |
ataa--atatttataatgtaggggttgtggttggggattatatgtgccctcatcgttcaagcgctttgtctaatgatcattacaatacgcactgattggg |
30482604 |
T |
|
| Q |
597 |
agaaagaggtgaa |
609 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30482603 |
agaaagaggtgaa |
30482591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 30501645 - 30501554
Alignment:
| Q |
11 |
ttatactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagta |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
30501645 |
ttatgctaattcgcaatatatggggatatgcttatagcaatgaagaagaagtggtcaaatatgtagcaaatatgatgccacttcttgcagta |
30501554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 30483685 - 30483551
Alignment:
| Q |
9 |
gattatactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaac |
108 |
Q |
| |
|
|||||||||| |||| ||| ||||||| || ||||||||||||||||||||||| || || |||||||||| |||| |||| ||| |||| |||||| || |
|
|
| T |
30483685 |
gattatactagttcgtaatttatggggctacgcttatagcaatgaagaagaagtggtaaattatgtagcaactatgatgccaattcttgccgtatcccac |
30483586 |
T |
|
| Q |
109 |
tttctggatggaatacaaagtgttctttcaggttt |
143 |
Q |
| |
|
|| || ||||| || ||| ||||||||||||||| |
|
|
| T |
30483585 |
ttactagatggcatgcaagctgttctttcaggttt |
30483551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 606
Target Start/End: Complemental strand, 30468284 - 30468208
Alignment:
| Q |
530 |
gggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggt |
606 |
Q |
| |
|
|||||||||||||||||| | | ||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30468284 |
gggatcatatgtgcactcattgctcaagccttttctctaatgatcattacattacgcactgattgggagaaagaggt |
30468208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 436
Target Start/End: Complemental strand, 30475419 - 30475286
Alignment:
| Q |
303 |
atccaggcactgctagaggagttggttggcaaaagatcggtgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagc |
402 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| |||||| ||||||| | ||||||| |||||||||||||||||||||||| | |||| || |
|
|
| T |
30475419 |
atccaggcattgctagaggatctggtttgcaaaaagctggtgcagttgtcaatttggggtcatgctatttagttgggattccagcagccataatatttgc |
30475320 |
T |
|
| Q |
403 |
ttttgtattgcatgttggcgggaaggtaaataaa |
436 |
Q |
| |
|
||||||||||||| | || | |||||||| |||| |
|
|
| T |
30475319 |
ttttgtattgcatatcggtgtgaaggtaattaaa |
30475286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 30475769 - 30475659
Alignment:
| Q |
25 |
aatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaatac |
124 |
Q |
| |
|
||||||||||| ||||| |||| ||| || |||||||||||| | ||||||||||||| || ||| ||||||||||| ||||||||||| | ||| |
|
|
| T |
30475769 |
aatatatggggctatgcatataccaaagacattgaagttgtcaaacaaatagcaattatgttaccaattcttgcagtatcctactttctggattcactac |
30475670 |
T |
|
| Q |
125 |
aaagtgttctt |
135 |
Q |
| |
|
||||||||||| |
|
|
| T |
30475669 |
aaagtgttctt |
30475659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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